Now
MAIN commitmail json YAML
math/py-numpy: pass -j$MAKE_JOBS to ninja
This avoids hogging all (virtual) CPU cores during build. This should be
set generically in wheel.mk or such, though.
This avoids hogging all (virtual) CPU cores during build. This should be
set generically in wheel.mk or such, though.
MAIN commitmail json YAML
math/py-scipy: pass -j$MAKE_JOBS to ninja
This avoids hogging all (virtual) CPU cores during build. This should be
set generically in wheel.mk or such, though.
This avoids hogging all (virtual) CPU cores during build. This should be
set generically in wheel.mk or such, though.
MAIN commitmail json YAML
math/cblas64: fix PLIST inline with cblas, lapacke64, was forgotten on recent update
MAIN commitmail json YAML
devel/zlib: add missing zlib.map
MAIN commitmail json YAML
devel/zlib: include the version script from upstream
Adding symbol versions to the shared library on Linux.
This brings zlib more in line what distro builds have on Linux, avoiding
lots of complaints in the case that you have to replace native zlib with
an upgraded version from pkgsrc (to build octave on CentOS 7.x, for
example).
Adding symbol versions to the shared library on Linux.
This brings zlib more in line what distro builds have on Linux, avoiding
lots of complaints in the case that you have to replace native zlib with
an upgraded version from pkgsrc (to build octave on CentOS 7.x, for
example).
MAIN commitmail json YAML
pkgsrc/emulators/qemu/Makefile@1.333
/
diff
pkgsrc/emulators/qemu/files/linux-user-test.h@1.1 / diff
pkgsrc/emulators/qemu/files/linux-user-test.h@1.1 / diff
emulators/qemu: deactivate user mode on too-old Linux
This checks if MAP_FIXED_NOREPLACE is available in libc headers and only
enables linux-user targets if there, avoiding inevitable build failure.
This is relevant for CentOS 7.9, ubuntu 18. May be phased out in some years,
I presume, or once the main qemu targets also stop working.
This checks if MAP_FIXED_NOREPLACE is available in libc headers and only
enables linux-user targets if there, avoiding inevitable build failure.
This is relevant for CentOS 7.9, ubuntu 18. May be phased out in some years,
I presume, or once the main qemu targets also stop working.
MAIN commitmail json YAML
biology/libpll: only works on Linux
MAIN commitmail json YAML
doc: Updated math/py-numba to 0.58.1
MAIN commitmail json YAML
pkgsrc/math/py-numba/Makefile@1.34
/
diff
pkgsrc/math/py-numba/PLIST@1.18 / diff
pkgsrc/math/py-numba/distinfo@1.26 / diff
pkgsrc/math/py-numba/PLIST@1.18 / diff
pkgsrc/math/py-numba/distinfo@1.26 / diff
math/py-numba: update to 0.58.1
This is the first version I tested with the re-vived py-llvmlite. This version
works with Pythons below 3.12 so far. Upstream changes since 0.55.2:
Version 0.58.1 (17 October 2023)
This is a maintenance release that adds support for NumPy 1.26 and fixes a bug.
NumPy Support
Support NumPy 1.26
Support for NumPy 1.26 is added.
(PR-#9227)
Bug Fixes
Fixed handling of float default arguments in inline closures
Float default arguments in inline closures would produce incorrect results since updates for Python 3.11 - these are now handled correctly again.
(PR-#9222)
Pull-Requests
PR #9220: Support passing arbitrary flags to NVVM (gmarkall)
PR #9227: Support NumPy 1.26 (PR aimed at review / merge) (Tialo gmarkall)
PR #9228: Fix #9222 - Don’t replace . with _ in func arg names in inline closures (gmarkall)
Authors
gmarkall
Tialo
Version 0.58.0 (20 September 2023)
Table of Contents
Version 0.58.0 (20 September 2023)
Highlights
New Features
Improvements
NumPy Support
CUDA Changes
Bug Fixes
Changes
Deprecations
Pull-Requests
Authors
This is a major Numba release. Numba now uses towncrier to create the release notes, so please find a summary of all noteworthy items below.
Highlights
Added towncrier
This PR adds towncrier as a GitHub workflow for checking release notes. From this PR onwards every PR made in Numba will require a appropriate release note associated with it. The reviewer may decide to skip adding release notes in smaller PRs with minimal impact by addition of a skip_release_notes label to the PR.
(PR-#8792)
The minimum supported NumPy version is 1.22.
Following NEP-0029, the minimum supported NumPy version is now 1.22.
(PR-#9093)
Add support for NumPy 1.25
Extend Numba to support new and changed features released in NumPy 1.25.
(PR-#9011)
Remove NVVM 3.4 and CTK 11.0 / 11.1 support
Support for CUDA toolkits < 11.2 is removed.
(PR-#9040)
Removal of Windows 32-bit Support
This release onwards, Numba has discontinued support for Windows 32-bit operating systems.
(PR-#9083)
The minimum llvmlite version is now 0.41.0.
The minimum required version of llvmlite is now version 0.41.0.
(PR-#8916)
Added RVSDG-frontend
This PR is a preliminary work on adding a RVSDG-frontend for processing bytecode. RVSDG (Regionalized Value-State Dependence Graph) allows us to have a dataflow-centric view instead of a traditional SSA-CFG view. This allows us to simplify the compiler in the future.
(PR-#9012)
New Features
numba.experimental.jitclass gains support for __*matmul__ methods.
numba.experimental.jitclass now has support for the following methods:
__matmul__
__imatmul__
__rmatmul__
(PR-#8892)
numba.experimental.jitclass gains support for reflected “dunder” methods.
numba.experimental.jitclass now has support for the following methods:
__radd__
__rand_
__rfloordiv__
__rlshift__
__ror_
__rmod_
__rmul_
__rpow_
__rrshift_
__rsub_
__rtruediv_
__rxor_
(PR-#8906)
Add support for value max to NUMBA_OPT.
The optimisation level that Numba applies when compiling can be set through the environment variable NUMBA_OPT. This has historically been a value between 0 and 3 (inclusive). Support for the value max has now been added, this is a Numba-specific optimisation level which indicates that the user would like Numba to try running the most optimisation possible, potentially trading a longer compilation time for better run-time performance. In practice, use of the max level of optimisation may or may not benefit the run-time or compile-time performance of user code, but it has been added to present an easy to access option for users to try if they so wish.
(PR-#9094)
Improvements
Updates to numba.core.pythonapi.
Support for Python C-API functions PyBytes_AsString and PyBytes_AsStringAndSize is added to numba.core.pythonapi.PythonAPI as bytes_as_string and bytes_as_string_and_size methods respectively.
(PR-#8462)
Support for isinstance is now non-experimental.
Support for the isinstance built-in function has moved from being considered an experimental feature to a fully supported feature.
(PR-#8911)
NumPy Support
All modes are supported in numpy.correlate and numpy.convolve.
All values for the mode argument to numpy.correlate and numpy.convolve are now supported.
(PR-#7543)
@vectorize accommodates arguments implementing __array_ufunc__.
Universal functions (ufuncs) created with numba.vectorize will now respect arguments implementing __array_ufunc__ (NEP-13) to allow pre- and post-processing of arguments and return values when the ufunc is called from the interpreter.
(PR-#8995)
Added support for np.geomspace function.
This PR improves on #4074 by adding support for np.geomspace. The current implementation only supports scalar start and stop parameters.
(PR-#9068)
Added support for np.vsplit, np.hsplit, np.dsplit.
This PR improves on #4074 by adding support for np.vsplit, np.hsplit, and np.dsplit.
(PR-#9082)
Added support for np.row_stack function.
Support is added for numpy.row_stack.
(PR-#9085)
Added support for functions np.polynomial.polyutils.trimseq, as well as functions polyadd, polysub, polymul from np.polynomial.polynomial.
Support is added for np.polynomial.polyutils.trimseq, np.polynomial.polynomial.polyadd, np.polynomial.polynomial.polysub, np.polynomial.polynomial.polymul.
(PR-#9087)
Added support for np.diagflat function.
Support is added for numpy.diagflat.
(PR-#9113)
Added support for np.resize function.
Support is added for numpy.resize.
(PR-#9118)
Add np.trim_zeros
Support for np.trim_zeros() is added.
(PR-#9074)
CUDA Changes
Bitwise operation ufunc support for the CUDA target.
Support is added for some ufuncs associated with bitwise operation on the CUDA target. Namely:
numpy.bitwise_and
numpy.bitwise_or
numpy.bitwise_not
numpy.bitwise_xor
numpy.invert
numpy.left_shift
numpy.right_shift
(PR-#8974)
Add support for the latest CUDA driver codes.
Support is added for the latest set of CUDA driver codes.
(PR-#8988)
Add NumPy comparison ufunc in CUDA
this PR adds support for comparison ufuncs for the CUDA target (eg. numpy.greater, numpy.greater_equal, numpy.less_equal, etc.).
(PR-#9007)
Report absolute path of libcuda.so on Linux
numba -s now reports the absolute path to libcuda.so on Linux, to aid troubleshooting driver issues, particularly on WSL2 where a Linux driver can incorrectly be installed in the environment.
(PR-#9034)
Add debuginfo support to nvdisasm output.
Support is added for debuginfo (source line and inlining information) in functions that make calls through nvdisasm. For example the CUDA dispatcher .inspect_sass method output is now augmented with this information.
(PR-#9035)
Add CUDA SASS CFG Support
This PR adds support for getting the SASS CFG in dot language format. It adds an inspect_sass_cfg() method to CUDADispatcher and the -cfg flag to the nvdisasm command line tool.
(PR-#9051)
Support NVRTC using the ctypes binding
NVRTC can now be used when the ctypes binding is in use, enabling float16, and linking CUDA C / C++ sources without needing the NVIDIA CUDA Python bindings.
(PR-#9086)
Fix CUDA atomics tests with toolkit 12.2
CUDA 12.2 generates slightly different PTX for some atomics, so the relevant tests are updated to look for the correct instructions when 12.2 is used.
(PR-#9088)
Bug Fixes
Handling of different sized unsigned integer indexes are fixed in numba.typed.List.
An issue with the order of truncation/extension and casting of unsigned integer indexes in numba.typed.List has been fixed.
(PR-#7262)
Prevent invalid fusion
This PR fixes an issue in which an array first read in a parfor and later written in the same parfor would only be classified as used in the parfor. When a subsequent parfor also used the same array then fusion of the parfors was happening which should have been forbidden given that that the first parfor was also writing to the array. This PR treats such arrays in a parfor as being both used and defined so that fusion will be prevented.
(PR-#7582)
The numpy.allclose implementation now correctly handles default arguments.
The implementation of numpy.allclose is corrected to use TypingError to report typing errors.
(PR-#8885)
Add type validation to numpy.isclose.
Type validation is added to the implementation of numpy.isclose.
(PR-#8944)
Fix support for overloading dispatcher with non-compatible first-class functions
Fixes an error caused by not handling compilation error during casting of Dispatcher objects into first-class functions. With the fix, users can now overload a dispatcher with non-compatible first-class functions. Refer to https://github.com/numba/numba/issues/9071 for details.
(PR-#9072)
Support dtype keyword argument in numpy.arange with parallel=True
Fixes parfors transformation to support the use of dtype keyword argument in numpy.arange(..., dtype=dtype).
(PR-#9095)
Fix all @overloads to use parameter names that match public APIs.
Some of the Numba @overloads for functions in NumPy and Python’s built-ins were written using parameter names that did not match those used in API they were overloading. The result of this being that calling a function with such a mismatch using the parameter names as key-word arguments at the call site would result in a compilation error. This has now been universally fixed throughout the code base and a unit test is running with a best-effort attempt to prevent reintroduction of similar mistakes in the future. Fixed functions include:
From Python built-ins:
complex
From the Python random module:
random.seed
random.gauss
random.normalvariate
random.randrange
random.randint
random.uniform
random.shuffle
From the numpy module:
numpy.argmin
numpy.argmax
numpy.array_equal
numpy.average
numpy.count_nonzero
numpy.flip
numpy.fliplr
numpy.flipud
numpy.iinfo
numpy.isscalar
numpy.imag
numpy.real
numpy.reshape
numpy.rot90
numpy.swapaxes
numpy.union1d
numpy.unique
From the numpy.linalg module:
numpy.linalg.norm
numpy.linalg.cond
numpy.linalg.matrix_rank
From the numpy.random module:
numpy.random.beta
numpy.random.chisquare
numpy.random.f
numpy.random.gamma
numpy.random.hypergeometric
numpy.random.lognormal
numpy.random.pareto
numpy.random.randint
numpy.random.random_sample
numpy.random.ranf
numpy.random.rayleigh
numpy.random.sample
numpy.random.shuffle
numpy.random.standard_gamma
numpy.random.triangular
numpy.random.weibull
(PR-#9099)
Changes
Support for @numba.extending.intrinsic(prefer_literal=True)
In the high level extension API, the prefer_literal option is added to the numba.extending.intrinsic decorator to prioritize the use of literal types when available. This has the same behavior as in the prefer_literal option in the numba.extending.overload decorator.
(PR-#6647)
Deprecations
Deprecation of old-style NUMBA_CAPTURED_ERRORS
Added deprecation schedule of NUMBA_CAPTURED_ERRORS=old_style. NUMBA_CAPTURED_ERRORS=new_style will become the default in future releases. Details are documented at https://numba.readthedocs.io/en/stable/reference/deprecation.html#deprecation-of-old-style-numba-captured-errors
(PR-#9090)
Pull-Requests
PR #6647: Support prefer_literal option for intrinsic decorator (ashutoshvarma sklam)
PR #7262: fix order of handling and casting (esc)
PR #7543: Support for all modes in np.correlate and np.convolve (jeertmans)
PR #7582: Use get_parfor_writes to detect illegal array access that prevents fusion. (DrTodd13)
PR #8371: Added binomial distribution (esc kc611)
PR #8462: Add PyBytes_AsString and PyBytes_AsStringAndSize (ianna)
PR #8633: DOC: Convert vectorize and guvectorize examples to doctests (Matt711)
PR #8730: Update dev-docs (sgbaird esc)
PR #8792: Added towncrier as a github workflow (kc611)
PR #8854: Updated mk_alloc to support Numba-Dpex compute follows data. (mingjie-intel)
PR #8861: CUDA: Don’t add device kwarg for jit registry (gmarkall)
PR #8871: Don’t return the function in CallConv.decorate_function() (gmarkall)
PR #8885: Fix np.allclose not handling default args (guilhermeleobas)
PR #8892: Add support for __*matmul__ methods in jitclass (louisamand)
PR #8895: CUDA: Enable caching functions that use CG (gmarkall)
PR #8906: Add support for reflected dunder methods in jitclass (louisamand)
PR #8911: Remove isinstance experimental feature warning (guilhermeleobas)
PR #8916: Bump llvmlite requirement to 0.41.0dev0 (sklam)
PR #8925: Update release checklist template (sklam)
PR #8937: Remove old Website development documentation (esc gmarkall)
PR #8944: Add exceptions to np.isclose (guilhermeleobas)
PR #8974: CUDA: Add binary ufunc support (Matt711)
PR #8976: Fix index URL for ptxcompiler/cubinlinker packages. (bdice)
PR #8978: Import MVC packages when using MVCLinker. (bdice)
PR #8983: Fix typo in deprecation.rst (dsgibbons)
PR #8988: support for latest CUDA driver codes #8363 (s1Sharp)
PR #8995: Allow libraries that implement __array_ufunc__ to override DUFunc.__c… (jpivarski)
PR #9007: CUDA: Add comparison ufunc support (Matt711)
PR #9012: RVSDG-frontend (sklam)
PR #9021: update the release checklist following 0.57.1rc1 (esc)
PR #9022: fix: update the C++ ABI repo reference (emmanuel-ferdman)
PR #9028: Replace use of imp module removed in 3.12 (hauntsaninja)
PR #9034: CUDA libs test: Report the absolute path of the loaded libcuda.so on Linux, + other improvements (gmarkall)
PR #9035: CUDA: Allow for debuginfo in nvdisasm output (Matt711)
PR #9037: Recognize additional functions as being pure or not having side effects. (DrTodd13)
PR #9039: Correct git clone link in installation instructions. (ellifteria)
PR #9040: Remove NVVM 3.4 and CTK 11.0 / 11.1 support (gmarkall)
PR #9046: copy the change log changes for 0.57.1 to main (esc)
PR #9050: Update CODEOWNERS (sklam)
PR #9051: Add CUDA CFG support (Matt711)
PR #9056: adding weekly meeting notes script (esc)
PR #9068: Adding np.geomspace (KrisMinchev)
PR #9069: Fix towncrier error due to importlib_resources upgrade (sklam)
PR #9072: Fix support for overloading dispatcher with non-compatible first-class functions (gmarkall sklam)
PR #9074: Add np.trim_zeros (sungraek guilhermeleobas)
PR #9082: Add np.vsplit, np.hsplit, and np.dsplit (KrisMinchev)
PR #9083: Removed windows 32 references from code and documentation (kc611)
PR #9085: Add tests for np.row_stack (KrisMinchev)
PR #9086: Support NVRTC using ctypes binding (testhound gmarkall)
PR #9087: Add trimseq from np.polynomial.polyutils and polyadd, polysub, polymul from np.polynomial.polynomial (KrisMinchev)
PR #9088: Fix: Issue 9063 - CUDA atomics tests failing with CUDA 12.2 (gmarkall)
PR #9090: Add deprecation notice for old_style error capturing. (esc sklam)
PR #9094: Add support for a ‘max’ level to NUMBA_OPT environment variable. (stuartarchibald)
PR #9095: Support dtype keyword in arange_parallel_impl (DrTodd13 sklam)
PR #9105: NumPy 1.25 support (PR #9011) continued (gmarkall apmasell)
PR #9111: Fixes ReST syntax error in PR#9099 (stuartarchibald gmarkall sklam apmasell)
PR #9112: Fixups for PR#9100 (stuartarchibald sklam)
PR #9113: Add support for np.diagflat (KrisMinchev)
PR #9114: update np min to 122 (stuartarchibald esc)
PR #9117: Fixed towncrier template rendering (kc611)
PR #9118: Add support for np.resize() (KrisMinchev)
PR #9120: Update conda-recipe for numba-rvsdg (sklam)
PR #9127: Fix accidental cffi test deps, refactor cffi skipping (gmarkall)
PR #9128: Merge rvsdg_frontend branch to main (esc sklam)
PR #9152: Fix old_style error capturing deprecation warnings (sklam)
PR #9159: Fix uncaught exception in find_file() (gmarkall)
PR #9173: Towncrier fixups (Continue #9158 and retarget to main branch) (sklam)
PR #9181: Remove extra decrefs in RNG (sklam)
PR #9190: Fix issue with incompatible multiprocessing context in test. (stuartarchibald)
Authors
apmasell
ashutoshvarma
bdice
DrTodd13
dsgibbons
ellifteria
emmanuel-ferdman
esc
gmarkall
guilhermeleobas
hauntsaninja
ianna
jeertmans
jpivarski
jtilly
kc611
KrisMinchev
louisamand
Matt711
mingjie-intel
s1Sharp
sgbaird
sklam
stuartarchibald
sungraek
testhound
Version 0.57.1 (21 June, 2023)
Pull-Requests:
PR #8964: fix missing nopython keyword in cuda random module (esc)
PR #8965: fix return dtype for np.angle (guilhermeleobas esc)
PR #8982: Don’t do the parfor diagnostics pass for the parfor gufunc. (DrTodd13)
PR #8996: adding a test for 8940 (esc)
PR #8958: resurrect the import, this time in the registry initialization (esc)
PR #8947: Introduce internal _isinstance_no_warn (guilhermeleobas esc)
PR #8998: Fix 8939 (second attempt) (esc)
PR #8978: Import MVC packages when using MVCLinker. (bdice)
PR #8895: CUDA: Enable caching functions that use CG (gmarkall)
PR #8976: Fix index URL for ptxcompiler/cubinlinker packages. (bdice)
PR #9004: Skip MVC test when libraries unavailable (gmarkall esc)
PR #9006: link to version support table instead of using explicit versions (esc)
PR #9005: Fix: Issue #8923 - avoid spurious device-to-host transfers in CUDA ufuncs (gmarkall)
Authors:
bdice
DrTodd13
esc
gmarkall
Version 0.57.0 (1 May, 2023)
This release continues to add new features, bug fixes and stability improvements to Numba. Please note that this release contains a significant number of both deprecation and pending-deprecation notices with view of making it easier to develop new technology for Numba in the future. Also note that this will be the last release to support Windows 32-bit packages produced by the Numba team.
Highlights of core dependency upgrades:
Support for Python 3.11 (minimum is moved to 3.8)
Support for NumPy 1.24 (minimum is moved to 1.21)
Python language support enhancements:
Exception classes now support arguments that are not compile time constant.
The built-in functions hasattr and getattr are supported for compile time constant attributes.
The built-in functions str and repr are now implemented similarly to their Python implementations. Custom __str__ and __repr__ functions can be associated with types and work as expected.
Numba’s unicode functionality in str.startswith now supports kwargs start and end.
min and max now support boolean types.
Support is added for the dict(iterable) constructor.
NumPy features/enhancements:
The largest set of new features is within the numpy.random.Generator support, the vast majority of commonly used distributions are now supported. Namely:
Generator.beta
Generator.chisquare
Generator.exponential
Generator.f
Generator.gamma
Generator.geometric
Generator.integers
Generator.laplace
Generator.logistic
Generator.lognormal
Generator.logseries
Generator.negative_binomial
Generator.noncentral_chisquare
Generator.noncentral_f
Generator.normal
Generator.pareto
Generator.permutation
Generator.poisson
Generator.power
Generator.random
Generator.rayleigh
Generator.shuffle
Generator.standard_cauchy
Generator.standard_exponential
Generator.standard_gamma
Generator.standard_normal
Generator.standard_t
Generator.triangular
Generator.uniform
Generator.wald
Generator.weibull
Generator.zipf
The nbytes property on NumPy ndarray types is implemented.
Nesting of nested-array types is now supported.
datetime and timedelta types can be cast to int.
F-order iteration is supported in ufunc generation for increased performance when using combinations of predominantly F-order arrays.
The following functions are also now supported:
np.argpartition
np.isclose
np.nan_to_num
np.new_axis
np.union1d
Highlights of core changes:
A large amount of refactoring has taken place to convert many of Numba’s internal implementations, of both Python and NumPy functions, from the low-level extension API to the high-level extension API (numba.extending).
The __repr__ method is supported for Numba types.
The default target for applicable functions in the extension API (numba.extending) is now "generic". This means that @overload* and @intrinsic functions will by default be accepted by both the CPU and CUDA targets.
The use of __getitem__ on Numba types is now supported in compiled code. i.e. types.float64[:, ::1] is now compilable.
Performance:
The performance of str.find() and str.rfind() has been improved.
Unicode support for __getitem__ now avoids allocation and returns a view.
The numba.typed.Dict dictionary now accepts an n_keys option to enable allocating the dictionary instance to a predetermined initial size (useful to avoid resizes!).
The Numba Run-time (NRT) has been improved in terms of performance and safety:
The NRT internal statistics counters are now off by default (removes atomic lock contentions).
Debug cache line filling is off by default.
The NRT is only compiled once a compilation starts opposed to at function decoration time, this improves import speed.
The NRT allocation calls are all made through a “checked” layer by default.
CUDA:
New NVIDIA hardware and software compatibility / support:
Toolkits: CUDA 11.8 and 12, with Minor Version Compatibility for 11.x.
Packaging: NVIDIA-packaged CUDA toolkit conda packages.
Hardware: Hopper, Ada Lovelace, and AGX Orin.
float16 support:
Arithmetic operations are now fully supported.
A new method, is_fp16_supported(), and device property, supports_float16, for checking the availability of float16 support.
Functionality:
The high-level extension API is now fully-supported in the CUDA target.
Eager compilation of multiple signatures, multiple outputs from generalized ufuncs, and specifying the return type of ufuncs are now supported.
A limited set of NumPy ufuncs (trigonometric functions) can now be called inside kernels.
Lineinfo quality improvement: enabling lineinfo no longer results in any changes to generated code.
Deprecations:
The numba.pycc module and everything in it is now pending deprecation.
The long awaited full deprecation of object mode fall-back is underway. This change means @jit with no keyword arguments will eventually alias @njit.
The @generated_jit decorator is deprecated as the Numba extension API provides a better supported superset of the same functionality, particularly through @numba.extending.overload.
Version support/dependency changes:
The setuptools package is now an optional run-time dependency opposed to a required run-time dependency.
The TBB threading-layer now requires version 2021.6 or later.
LLVM 14 is now supported on all platforms via llvmlite.
Pull-Requests:
PR #5113: Fix error handling in the Interval extending example (esc eric-wieser)
PR #5544: Add support for np.union1d (shangbol gmarkall)
PR #7009: Add writable args (dmbelov)
PR #7067: Implement np.isclose (guilhermeleobas)
PR #7255: CUDA: Support CUDA Toolkit conda packages from NVIDIA (gmarkall)
PR #7622: Support fortran loop ordering for ufunc generation (sklam)
PR #7733: fix for /tmp/tmp access issues (ChiCheng45)
PR #7884: Implement getattr builtin. (stuartarchibald)
PR #7885: Adds CUDA FP16 arithmetic operators (testhound)
PR #7920: Drop pre-3.7 code path (CPU only) (sklam)
PR #8001: CUDA fp16 math functions (testhound gmarkall)
PR #8010: Add support for fp16 comparison native operators (testhound)
PR #8024: Allow converting NumPy datetimes to int (apmasell)
PR #8038: Support for Numpy BitGenerators PR#2: Standard Distributions support (kc611)
PR #8040: Support for Numpy BitGenerators PR#3: Advanced Distributions Support. (kc611)
PR #8041: Support for Numpy BitGenerators PR#4: Generator().integers() Support. (kc611)
PR #8042: Support for NumPy BitGenerators PR#5: Generator Shuffling Methods. (kc611)
PR #8061: Migrate random glue_lowering to overload where easy (apmasell)
PR #8106: Remove injection of atomic JIT functions into NRT memsys. (stuartarchibald)
PR #8120: Support nesting of nested array types (gmarkall)
PR #8134: Support non-constant exception values in JIT (guilhermeleobas sklam)
PR #8147: Adds size variable at runtime for arrays that cannot be inferred (njriasan)
PR #8154: Testhound/native cast 8138 (testhound)
PR #8158: adding -pthread for linux-ppc64le in setup.py (esc)
PR #8164: remove myself from automatic reviewer assignment (esc)
PR #8167: CUDA: Facilitate and document passing arrays / pointers to foreign functions (gmarkall)
PR #8180: CUDA: Initial support for Minor Version Compatibility (gmarkall)
PR #8183: Add n_keys option to Dict.empty() (stefanfed gmarkall)
PR #8198: Update the release template to include updating the version table. (stuartarchibald)
PR #8200: Make the NRT use the “unsafe” allocation API by default. (stuartarchibald)
PR #8201: Bump llvmlite dependency to 0.40.dev0 for Numba 0.57.0dev0 (stuartarchibald)
PR #8207: development tag should be in monofont (esc)
PR #8212: release checklist: include a note to ping @RC_testers on discourse (esc)
PR #8216: chore: Set permissions for GitHub actions (naveensrinivasan)
PR #8217: Fix syntax in docs (jorgepiloto)
PR #8220: Added the interval example as doctest (kc611)
PR #8221: CUDA stubs docstring: Replace illegal escape sequence (gmarkall)
PR #8228: Fix typo in @vectorize docstring and a NumPy spelling. (stuartarchibald)
PR #8229: Remove mk_unique_var in inline_closurecall.py (sklam)
PR #8234: Replace @overload_glue by @overload for 20 NumPy functions (guilhermeleobas)
PR #8235: Make the NRT stats counters optional. (stuartarchibald)
PR #8238: Advanced Indexing Support #1 (kc611)
PR #8240: Add get_shared_mem_per_block method to Dispatcher (testhound)
PR #8241: Reorder typeof checks to avoid infinite loops on StructrefProxy __hash__ (DannyWeitekamp)
PR #8243: Add a note to reference/numpysupported.rst ()
PR #8245: Fix links in CONTRIBUTING.md ()
PR #8247: Fix issue 8127 (bszollosinagy)
PR #8250: Fix issue 8161 (bszollosinagy)
PR #8253: CUDA: Verify NVVM IR prior to compilation (gmarkall)
PR #8255: CUDA: Make numba.cuda.tests.doc_examples.ffi a module to fix #8252 (gmarkall)
PR #8256: Migrate linear algebra functions from glue_lowering (apmasell)
PR #8258: refactor np.where to use overload (guilhermeleobas)
PR #8259: Add np.broadcast_to(scalar_array, ()) (guilhermeleobas)
PR #8264: remove mk_unique_var from parfor_lowering_utils.py (guilhermeleobas)
PR #8265: Remove mk_unique_var from array_analysis.py (guilhermeleobas)
PR #8266: Remove mk_unique_var in untyped_passes.py (guilhermeleobas)
PR #8267: Fix segfault for invalid axes in np.split (aseyboldt)
PR #8271: Implement some CUDA intrinsics with @overload, @overload_attribute, and @intrinsic (gmarkall)
PR #8274: Update version support table doc for 0.56. (stuartarchibald)
PR #8275: Update CHANGE_LOG for 0.56.0 final (stuartarchibald)
PR #8283: Clean up / remove support for old NumPy versions (gmarkall)
PR #8287: Drop CUDA 10.2 (gmarkall)
PR #8289: Revert #8265. (stuartarchibald)
PR #8290: CUDA: Replace use of deprecated NVVM IR features, questionable constructs (gmarkall)
PR #8292: update checklist (esc)
PR #8294: CUDA: Add trig ufunc support (gmarkall)
PR #8295: Add get_const_mem_size method to Dispatcher (testhound gmarkall)
PR #8297: Add __name__ attribute to CUDAUFuncDispatcher and test case (testhound)
PR #8299: Fix build for mingw toolchain (Biswa96)
PR #8302: CUDA: Revert numba_nvvm intrinsic name workaround (gmarkall)
PR #8308: CUDA: Support for multiple signatures (gmarkall)
PR #8315: Add get_local_mem_per_thread method to Dispatcher (testhound)
PR #8319: Bump minimum supported Python version to 3.8 (esc stuartarchibald jamesobutler)
PR #8320: Add __name__ support for GUFuncs (testhound)
PR #8321: Fix literal_unroll pass erroneously exiting on non-conformant loop. (stuartarchibald)
PR #8325: Remove use of mk_unique_var in stencil.py (bszollosinagy)
PR #8326: Remove mk_unique_var from parfor_lowering.py (guilhermeleobas)
PR #8331: Extend docs with info on how to call C functions from Numba (guilhermeleobas)
PR #8334: Add dict(*iterable) constructor (guilhermeleobas)
PR #8335: Remove deprecated pycc script and related source. (stuartarchibald)
PR #8336: Fix typos of “Generalized” in GUFunc-related code (gmarkall)
PR #8338: Calculate reductions before fusion so that use of reduction vars can stop fusion. (DrTodd13)
PR #8339: Fix #8291 parfor leak of redtoset variable (sklam)
PR #8341: CUDA: Support multiple outputs for Generalized Ufuncs (gmarkall)
PR #8343: Eliminate references to type annotation in compile_ptx (testhound)
PR #8348: Add get_max_threads_per_block method to Dispatcher (testhound)
PR #8354: pin setuptools to < 65 and switch from mamba to conda on RTD (esc gmarkall)
PR #8357: Clean up the buildscripts directory. (stuartarchibald)
PR #8359: adding warnings about cache behaviour (luk-f-a)
PR #8368: Remove glue_lowering in random math that requires IR (apmasell)
PR #8376: Fix issue 8370 (bszollosinagy)
PR #8387: Add support for compute capability in IR Lowering (testhound)
PR #8388: Remove more references to the pycc binary. (stuartarchibald)
PR #8389: Make C++ extensions compile with correct compiler (apmasell)
PR #8390: Use NumPy logic for lessthan in sort to move NaNs to the back. (sklam)
PR #8401: Remove Cuda toolkit version check (testhound)
PR #8415: Refactor numba.np.arraymath methods from lower_builtins to overloads (kc611)
PR #8418: Fixes ravel failure on 1d arrays (#5229) (cako)
PR #8421: Update release checklist: add a task to check dependency pinnings on subsequent releases (e.g. PATCH) (esc)
PR #8422: Switch public CI builds to use gdb from conda packages. (stuartarchibald)
PR #8423: Remove public facing and CI references to 32 bit linux support. (stuartarchibald, in addition, we are grateful for the contribution of jamesobutler towards a similar goal in PR #8319)
PR #8425: Post 0.56.2 cleanup (esc)
PR #8427: Shorten the time to verify test discovery. (stuartarchibald)
PR #8429: changelog generator script (esc)
PR #8431: Replace @overload_glue by @overload for np.linspace and np.take (guilhermeleobas)
PR #8432: Refactor carray/farray to use @overload (guilhermeleobas)
PR #8435: Migrate np.atleast_? functions from glue_lowering to overload (apmasell)
PR #8438: Make the initialisation of the NRT more lazy for the njit decorator. (stuartarchibald)
PR #8439: Update the contributing docs to include a policy on formatting changes. (stuartarchibald)
PR #8440: [DOC]: Replaces icc_rt with intel-cmplr-lib-rt (oleksandr-pavlyk)
PR #8442: Implement hasattr(), str() and repr(). (stuartarchibald)
PR #8446: add version info in ImportError’s (raybellwaves)
PR #8450: remove GitHub username from changelog generation script (esc)
PR #8467: Convert implementations using generated_jit to overload (gmarkall)
PR #8468: Reference test suite in installation documentation (apmasell)
PR #8469: Correctly handle optional types in parfors lowering (apmasell)
PR #8473: change the include style in _pymodule.h and remove unused or duplicate headers in two header files ()
PR #8476: Make setuptools optional at runtime. (stuartarchibald)
PR #8490: Restore installing SciPy from defaults instead of conda-forge on public CI (esc)
PR #8494: Remove context.compile_internal where easy on numba/cpython/cmathimpl.py (guilhermeleobas)
PR #8495: Removes context.compile_internal where easy on numba/cpython/listobj.py (guilhermeleobas)
PR #8496: Rewrite most of the set API to use overloads (guilhermeleobas)
PR #8499: Deprecate numba.generated_jit (stuartarchibald)
PR #8508: This updates the release checklists to capture some more checks. (stuartarchibald)
PR #8513: Added support for numpy.newaxis (kc611)
PR #8517: make some typedlist C-APIs public ()
PR #8518: Adjust stencil tests to use hardcoded python source opposed to AST. (stuartarchibald)
PR #8520: Added noncentral-chisquared, noncentral-f and logseries distributions (kc611)
PR #8522: Import jitclass from numba.experimental in jitclass documentation (armgabrielyan)
PR #8524: Fix grammar in stencil.rst (armgabrielyan)
PR #8525: Making CUDA specific datamodel manager (sklam)
PR #8526: Fix broken url (Nimrod0901)
PR #8527: Fix grammar in troubleshoot.rst (armgabrielyan)
PR #8532: Vary NumPy version on gpuCI (gmarkall)
PR #8535: LLVM14 (apmasell)
PR #8536: Fix fusion bug. (DrTodd13)
PR #8539: Fix #8534, np.broadcast_to should update array size attr. (stuartarchibald)
PR #8541: Remove restoration of “free” channel in Azure CI windows builds. (stuartarchibald)
PR #8542: CUDA: Make arg optional for Stream.add_callback() (gmarkall)
PR #8544: Remove reliance on npy_<impl> ufunc loops. (stuartarchibald)
PR #8545: Py3.11 basic support (esc sklam)
PR #8547: [Unicode] Add more string view usages for unicode operations ()
PR #8549: Fix rstcheck in Azure CI builds, update sphinx dep and docs to match (stuartarchibald)
PR #8550: Changes how tests are split between test instances (apmasell)
PR #8554: Make target for @overload have ‘generic’ as default. (stuartarchibald gmarkall)
PR #8557: [Unicode] support startswith with args, start and end. ()
PR #8566: Update workqueue abort message on concurrent access. (stuartarchibald)
PR #8572: CUDA: Reduce memory pressure from local memory tests (gmarkall)
PR #8579: CUDA: Add CUDA 11.8 / Hopper support and required fixes (gmarkall)
PR #8580: adding note about doing a wheel test build prior to tagging (esc)
PR #8583: Skip tests that contribute to M1 RuntimeDyLd Assertion error (sklam)
PR #8587: Remove unused refcount removal code, clean core/cpu.py module. (stuartarchibald)
PR #8588: Remove lowering extension hooks, replace with pass infrastructure. (stuartarchibald)
PR #8590: Py3.11 support continues (sklam)
PR #8592: fix failure of test_cache_invalidate due to read-only install (tpwrules)
PR #8593: Adjusted ULP precesion for noncentral distribution test (kc611)
PR #8594: Fix various CUDA lineinfo issues (gmarkall)
PR #8597: Prevent use of NumPy’s MaskedArray. (stuartarchibald)
PR #8598: Setup Azure CI to test py3.11 (sklam)
PR #8600: Chrome trace timestamp should be in microseconds not seconds. (sklam)
PR #8602: Throw error for unsupported dunder methods (apmasell)
PR #8605: Support for CUDA fp16 math functions (part 1) (testhound)
PR #8606: [Doc] Make the RewriteArrayExprs doc more precise ()
PR #8619: Added flat iteration logic for random distributions (kc611)
PR #8623: Adds support for np.nan_to_num (thomasjpfan)
PR #8624: DOC: Add guvectorize scalar return example (Matt711)
PR #8625: Refactor test_ufuncs (gmarkall)
PR #8626: [unicode-PERF]: use optmized BM algorithm to replace the brute-force finder (dlee992)
PR #8630: Fix #8628: Don’t test math.trunc with non-float64 NumPy scalars (gmarkall)
PR #8634: Add new method is_fp16_supported (testhound)
PR #8636: CUDA: Skip test_ptds on Windows (gmarkall)
PR #8639: Python 3.11 - fix majority of remaining test failures. (stuartarchibald)
PR #8644: Fix bare reraise support (sklam)
PR #8649: Remove numba.core.overload_glue module. (apmasell)
PR #8659: Preserve module name of jitted class (neilflood)
PR #8661: Make external compiler discovery lazy in the test suite. (stuartarchibald)
PR #8662: Add support for .nbytes accessor for numpy arrays (alanhdu)
PR #8666: Updates for Python 3.8 baseline/Python 3.11 migration (stuartarchibald)
PR #8673: Enable the CUDA simulator tests on Windows builds in Azure CI. (stuartarchibald)
PR #8675: Make always_run test decorator a tag and improve shard tests. (stuartarchibald)
PR #8677: Add support for min and max on boolean types. (DrTodd13)
PR #8680: Adjust flake8 config to be compatible with flake8=6.0.0 (thomasjpfan)
PR #8685: Implement __repr__ for numba types (luk-f-a)
PR #8691: NumPy 1.24 (gmarkall)
PR #8697: Close stale issues after 7 days (gmarkall)
PR #8701: Relaxed ULP testing precision for NumPy Generator tests across all systems (kc611)
PR #8702: Supply concrete timeline for objmode fallback deprecation/removal. (stuartarchibald)
PR #8706: Fix doctest for @vectorize (sklam)
PR #8711: Python 3.11 tracing support (continuation of #8670). (AndrewVallette sklam)
PR #8716: CI: Use set -e in “Before Install” step and fix install (gmarkall)
PR #8720: Enable coverage for subprocess testing (sklam)
PR #8723: Check for void return type in cuda.compile_ptx (brandonwillard)
PR #8726: Make Numba dependency check run ahead of Numba internal imports. (stuartarchibald)
PR #8728: Fix flake8 checks since upgrade to flake8=6.x (stuartarchibald)
PR #8729: Run flake8 CI step in multiple processes. (stuartarchibald)
PR #8732: Add numpy argpartition function support ()
PR #8735: Update bot to close PRs waiting on authors for more than 3 months (guilhermeleobas)
PR #8736: Implement np.lib.stride_tricks.sliding_window_view ()
PR #8744: Update CtypesLinker::add_cu error message to include fp16 usage (testhound gmarkall)
PR #8746: Fix failing test_dispatcher test case (testhound)
PR #8748: Suppress known test failures for py3.11 (sklam)
PR #8751: Recycle test runners more aggressively (apmasell)
PR #8752: Flake8 fixes for py311 branch (esc sklam)
PR #8760: Bump llvmlite PR in py3.11 branch testing (sklam)
PR #8764: CUDA tidy-up: remove some unneeded methods (gmarkall)
PR #8765: BLD: remove distutils (fangchenli)
PR #8766: Stale bot: Use abandoned - stale label for closed PRs (gmarkall)
PR #8771: Update vendored Versioneer from 0.14 to 0.28 (oscargus gmarkall)
PR #8775: Revert PR#8751 for buildfarm stability (sklam)
PR #8780: Improved documentation for Atomic CAS (MiloniAtal)
PR #8781: Ensure gc.collect() is called before checking refcount in tests. (sklam)
PR #8782: Changed wording of the escape error (MiloniAtal)
PR #8786: Upgrade stale GitHub action (apmasell)
PR #8788: CUDA: Fix returned dtype of vectorized functions (Issue #8400) (gmarkall)
PR #8790: CUDA compare and swap with index (ianthomas23)
PR #8795: Add pending-deprecation warnings for numba.pycc (stuartarchibald)
PR #8802: Move the minimum supported NumPy version to 1.21 (stuartarchibald)
PR #8803: Attempted fix to #8789 by changing compile_ptx to accept a signature instead of argument tuple (KyanCheung)
PR #8804: Split parfor pass into 3 parts (DrTodd13)
PR #8809: Update LLVM versions for 0.57 release (apmasell)
PR #8810: Fix llvmlite dependency in meta.yaml (sklam)
PR #8816: Fix some buildfarm test failures (sklam)
PR #8819: Support “static” __getitem__ on Numba types in @njit code. (stuartarchibald)
PR #8822: Merge py3.11 branch to main (esc AndrewVallette stuartarchibald sklam)
PR #8826: CUDA CFFI test: conditionally require cffi module (gmarkall)
PR #8831: Redo py3.11 sync branch with main (sklam)
PR #8833: Fix typeguard import hook location. (stuartarchibald)
PR #8836: Fix failing typeguard test. (stuartarchibald)
PR #8837: Update AzureCI matrix for Python 3.11/NumPy 1.21..1.24 (stuartarchibald)
PR #8839: Add Dynamic Shared Memory example. (k1m190r)
PR #8842: Fix buildscripts, setup.py, docs for setuptools becoming optional. (stuartarchibald)
PR #8843: Pin typeguard to 3.0.1 in AzureCI. (stuartarchibald)
PR #8848: added lifted loops to glossary term (cherieliu)
PR #8852: Disable SLP vectorisation due to miscompilations. (stuartarchibald)
PR #8855: DOC: pip into double backticks in installing.rst (F3eQnxN3RriK)
PR #8856: Update TBB to use >= 2021.6 by default. (kozlov-alexey stuartarchibald)
PR #8858: Update deprecation notice for objmode fallback RE @jit use. (stuartarchibald)
PR #8864: Remove obsolete deprecation notices (gmarkall)
PR #8866: Revise CUDA deprecation notices (gmarkall)
PR #8869: Update CHANGE_LOG for 0.57.0rc1 (stuartarchibald esc gmarkall)
PR #8870: Fix opcode “spelling” change since Python 3.11 in CUDA debug test. (stuartarchibald)
PR #8879: Remove use of compile_isolated from generator tests. (stuartarchibald)
PR #8880: Fix missing dependency guard on pyyaml in test_azure_config. (stuartarchibald)
PR #8881: Replace use of compile_isolated in test_obj_lifetime (sklam)
PR #8884: Pin llvmlite and NumPy on release branch (sklam)
PR #8887: Update PyPI supported version tags (bryant1410)
PR #8896: Remove codecov install (now deleted from PyPI) (gmarkall)
PR #8902: Enable CALL_FUNCTION_EX fix for py3.11 (sklam)
PR #8907: Work around issue #8898. Defer exp2 (and log2) calls to Numba internal symbols. (stuartarchibald)
PR #8909: Fix #8903. NumbaDeprecationWarning``s raised from ``@{gu,}vectorize. (stuartarchibald)
PR #8929: Update CHANGE_LOG for 0.57.0 final. (stuartarchibald)
PR #8930: Fix year in change log (jtilly)
PR #8932: Fix 0.57 release changelog (sklam)
Authors:
alanhdu
AndrewVallette
apmasell
armgabrielyan
aseyboldt
Biswa96
brandonwillard
bryant1410
bszollosinagy
cako
cherieliu
ChiCheng45
DannyWeitekamp
dlee992
dmbelov
DrTodd13
eric-wieser
esc
F3eQnxN3RriK
fangchenli
gmarkall
guilhermeleobas
ianthomas23
jamesobutler
jorgepiloto
jtilly
k1m190r
kc611
kozlov-alexey
KyanCheung
luk-f-a
Matt711
MiloniAtal
naveensrinivasan
neilflood
Nimrod0901
njriasan
oleksandr-pavlyk
oscargus
raybellwaves
shangbol
sklam
stefanfed
stuartarchibald
testhound
thomasjpfan
tpwrules
Version 0.56.4 (3 November, 2022)
This is a bugfix release to fix a regression in the CUDA target in relation to the .view() method on CUDA device arrays that is present when using NumPy version 1.23.0 or later.
Pull-Requests:
PR #8537: Make ol_compatible_view accessible on all targets (gmarkall)
PR #8552: Update version support table for 0.56.4. (stuartarchibald)
PR #8553: Update CHANGE_LOG for 0.56.4 (stuartarchibald)
PR #8570: Release 0.56 branch: Fix overloads with target="generic" for CUDA (gmarkall)
PR #8571: Additional update to CHANGE_LOG for 0.56.4 (stuartarchibald)
Authors:
gmarkall
stuartarchibald
Version 0.56.3 (13 October, 2022)
This is a bugfix release to remove the version restriction applied to the setuptools package and to fix a bug in the CUDA target in relation to copying zero length device arrays to zero length host arrays.
Pull-Requests:
PR #8475: Remove setuptools version pin (gmarkall)
PR #8482: Fix #8477: Allow copies with different strides for 0-length data (gmarkall)
PR #8486: Restrict the TBB development package to supported version in Azure. (stuartarchibald)
PR #8503: Update version support table for 0.56.3 (stuartarchibald)
PR #8504: Update CHANGE_LOG for 0.56.3 (stuartarchibald)
Authors:
gmarkall
stuartarchibald
Version 0.56.2 (1 September, 2022)
This is a bugfix release that supports NumPy 1.23 and fixes CUDA function caching.
Pull-Requests:
PR #8239: Add decorator to run a test in a subprocess (stuartarchibald)
PR #8276: Move Azure to use macos-11 (stuartarchibald)
PR #8310: CUDA: Fix Issue #8309 - atomics don’t work on complex components (Graham Markall)
PR #8342: Upgrade to ubuntu-20.04 for azure pipeline CI (jamesobutler)
PR #8356: Update setup.py, buildscripts, CI and docs to require setuptools<60 (stuartarchibald)
PR #8374: Don’t pickle LLVM IR for CUDA code libraries (Graham Markall)
PR #8377: Add support for NumPy 1.23 (stuartarchibald)
PR #8384: Move strace() check into tests that actually need it (stuartarchibald)
PR #8386: Fix the docs for numba.get_thread_id (stuartarchibald)
PR #8407: Pin NumPy version to 1.18-1.24 (Andre Masella)
PR #8411: update version support table for 0.56.1 (esc)
PR #8412: Create changelog for 0.56.1 (Andre Masella)
PR #8413: Fix Azure CI for NumPy 1.23 and use conda-forge scipy (Siu Kwan Lam)
PR #8414: Hotfix for 0.56.2 (Siu Kwan Lam)
Authors:
Andre Masella
esc
Graham Markall
jamesobutler
Siu Kwan Lam
stuartarchibald
Version 0.56.1 (NO RELEASE)
The release was skipped due to issues during the release process.
Version 0.56.0 (25 July, 2022)
This release continues to add new features, bug fixes and stability improvements to Numba. Please note that this will be the last release that has support for Python 3.7 as the next release series (Numba 0.57) will support Python 3.11! Also note that, this will be the last release to support linux-32 packages produced by the Numba team.
Python language support enhancements:
Previously missing support for large, in-line dictionaries and internal calls to functions with large numbers of keyword arguments in Python 3.10 has been added.
operator.mul now works for list s.
Literal slices, e.g. slice(1, 10, 2) can be returned from nopython mode functions.
The len function now works on dict_keys, dict_values and dict_items .
Numba’s set implementation now supports reference counted items e.g. strings.
Numba specific feature enhancements:
The experimental jitclass feature gains support for a large number of builtin methods e.g. declaring __hash__ or __getitem__ for a jitclass type.
It’s now possible to use @vectorize on an already @jit family decorated function.
Name mangling has been updated to emit compiled function names that exactly match the function name in Python. This means debuggers, like GDB, can be set to break directly on Python function names.
A GDB “pretty printing” support module has been added, when loaded into GDB Numba’s internal representations of Python/NumPy types are rendered inside GDB as they would be in Python.
An experimental option is added to the @jit family decorators to entirely turn off LLVM’s optimisation passes for a given function (see _dbg_optnone kwarg in the @jit decorator family).
A new environment variable is added NUMBA_EXTEND_VARIABLE_LIFETIMES, which if set will extend the lifetime of variables to the end of their basic block, this to permit a debugging experience in GDB similar to that found in compiled C/C++/Fortran code.
NumPy features/enhancements:
Initial support for passing, using and returning numpy.random.Generator instances has been added, this currently includes support for the random distribution.
The broadcasting functions np.broadcast_shapes and np.broadcast_arrays are now supported.
The min and max functions now work with np.timedelta64 and np.datetime64 types.
Sorting multi-dimensional arrays along the last axis is now supported in np.sort().
The np.clip function is updated to accept NumPy arrays for the a_min and a_max arguments.
The NumPy allocation routines (np.empty , np.ones etc.) support shape arguments specified using members of enum.IntEnum s.
The function np.random.noncentral_chisquare is now supported.
The performance of functions np.full and np.ones has been improved.
Parallel Accelerator enhancements:
The parallel=True functionality is enhanced through the addition of the functions numba.set_parallel_chunksize and numba.get_parallel_chunksize to permit a more fine grained scheduling of work defined in a parallel region. There is also support for adjusting the chunksize via a context manager.
The ID of a thread is now defined to be predictable and within a known range, it is available through calling the function numba.get_thread_id.
The performance of @stencil s has been improved in both serial and parallel execution.
CUDA enhancements:
New functionality:
Self-recursive device functions.
Vector type support (float4, int2, etc.).
Shared / local arrays of extension types can now be created.
Support for linking CUDA C / C++ device functions into Python kernels.
PTX generation for Compute Capabilities 8.6 and 8.7 - e.g. RTX A series, GTX 3000 series.
Comparison operations for float16 types.
Performance improvements:
Context queries are no longer made during launch configuration.
Launch configurations are now LRU cached.
On-disk caching of CUDA kernels is now supported.
Documentation: many new examples added.
Docs:
Numba now has an official “mission statement”.
There’s now a “version support table” in the documentation to act as an easy to use, single reference point, for looking up information about Numba releases and their required/supported dependencies.
General Enhancements:
Numba imports more quickly in environments with large numbers of packages as it now uses importlib-metadata for querying other packages.
Emission of chrome tracing output is now supported for the internal compilation event handling system.
This release is tested and known to work when using the Pyston Python interpreter.
Pull-Requests:
PR #5209: Use importlib to load numba extensions (Stepan Rakitin Graham Markall stuartarchibald)
PR #5877: Jitclass builtin methods (Ethan Pronovost Graham Markall)
PR #6490: Stencil output allocated with np.empty now and new code to initialize the borders. (Todd A. Anderson)
PR #7005: Make numpy.searchsorted match NumPy when first argument is unsorted (Brandon T. Willard)
PR #7363: Update cuda.local.array to clarify “simple constant expression” (e.g. no NumPy ints) (Sterling Baird)
PR #7364: Removes an instance of signed integer overflow undefined behaviour. (Tobias Sargeant)
PR #7537: Add chrome tracing (Hadia Ahmed Siu Kwan Lam)
PR #7556: Testhound/fp16 comparison (Michael Collison Graham Markall)
PR #7586: Support for len on dict.keys, dict.values, and dict.items (Nick Riasanovsky)
PR #7617: Numba gdb-python extension for printing (stuartarchibald)
PR #7619: CUDA: Fix linking with PTX when compiling lazily (Graham Markall)
PR #7621: Add support for linking CUDA C / C++ with @cuda.jit kernels (Graham Markall)
PR #7625: Combined parfor chunking and caching PRs. (stuartarchibald Todd A. Anderson Siu Kwan Lam)
PR #7651: DOC: pypi and conda-forge badges (Ray Bell)
PR #7660: Add support for np.broadcast_arrays (Guilherme Leobas)
PR #7664: Flatten mangling dicts into a single dict (Graham Markall)
PR #7680: CUDA Docs: include example calling slow matmul (Graham Markall)
PR #7682: performance improvements to np.full and np.ones (Rishi Kulkarni)
PR #7684: DOC: remove incorrect warning in np.random reference (Rishi Kulkarni)
PR #7685: Don’t convert setitems that have dimension mismatches to parfors. (Todd A. Anderson)
PR #7690: Implemented np.random.noncentral_chisquare for all size arguments (Rishi Kulkarni)
PR #7695: IntEnumMember support for np.empty, np.zeros, and np.ones (Benjamin Graham)
PR #7699: CUDA: Provide helpful error if the return type is missing for declare_device (Graham Markall)
PR #7700: Support for scalar arguments in Np.ascontiguousarray (Dhruv Patel)
PR #7703: Ignore unsupported types in ShapeEquivSet._getnames() (Benjamin Graham)
PR #7704: Move the type annotation pass to post legalization. (stuartarchibald)
PR #7709: CUDA: Fixes missing type annotation pass following #7704 (stuartarchibald)
PR #7712: Fixing issue 7693 (stuartarchibald Graham Markall luk-f-a)
PR #7714: Support for boxing SliceLiteral type (Nick Riasanovsky)
PR #7718: Bump llvmlite dependency to 0.39.0dev0 for Numba 0.56.0dev0 (stuartarchibald)
PR #7724: Update URLs in error messages to refer to RTD docs. (stuartarchibald)
PR #7728: Document that AOT-compiled functions do not check arg types (Graham Markall)
PR #7729: Handle Omitted/OmittedArgDataModel in DI generation. (stuartarchibald)
PR #7732: update release checklist following 0.55.0 RC1 (esc)
PR #7736: Update CHANGE_LOG for 0.55.0 final. (stuartarchibald)
PR #7740: CUDA Python 11.6 support (Graham Markall)
PR #7744: Fix issues with locating/parsing source during DebugInfo emission. (stuartarchibald)
PR #7745: Fix the release year for Numba 0.55 change log entry. (stuartarchibald)
PR #7748: Fix #7713: Ensure _prng_random_hash return has correct bitwidth (Graham Markall)
PR #7749: Refactor threading layer priority tests to not use stdout/stderr (stuartarchibald)
PR #7752: Fix #7751: Use original filename for array exprs (Graham Markall)
PR #7755: CUDA: Deprecate support for CC < 5.3 and CTK < 10.2 (Graham Markall)
PR #7763: Update Read the Docs configuration (automatic) (readthedocs-assistant)
PR #7764: Add dbg_optnone and dbg_extend_lifetimes flags (Siu Kwan Lam)
PR #7771: Move function unique ID to abi-tags (stuartarchibald Siu Kwan Lam)
PR #7772: CUDA: Add Support to Creating StructModel Array (Michael Wang)
PR #7776: Updates coverage.py config (stuartarchibald)
PR #7777: Remove reference existing issue from GH template. (stuartarchibald)
PR #7778: Remove long deprecated flags from the CLI. (stuartarchibald)
PR #7780: Fix sets with reference counted items (Benjamin Graham)
PR #7782: adding reminder to check on deprecations (esc)
PR #7783: remove upper limit on Python version (esc)
PR #7786: Remove dependency on intel-openmp for OSX (stuartarchibald)
PR #7788: Avoid issue with DI gen for arrayexprs. (stuartarchibald)
PR #7796: update change-log for 0.55.1 (esc)
PR #7797: prune README (esc)
PR #7799: update the release checklist post 0.55.1 (esc)
PR #7801: add sdist command and umask reminder (esc)
PR #7804: update local references from master -> main (esc)
PR #7805: Enhance source line finding logic for debuginfo (Siu Kwan Lam)
PR #7809: Updates the gdb configuration to accept a binary name or a path. (stuartarchibald)
PR #7813: Extend parfors test timeout for aarch64. (stuartarchibald)
PR #7814: CUDA Dispatcher refactor (Graham Markall)
PR #7815: CUDA Dispatcher refactor 2: inherit from dispatcher.Dispatcher (Graham Markall)
PR #7817: Update intersphinx URLs for NumPy and llvmlite. (stuartarchibald)
PR #7823: Add renamed vars to callee scope such that it is self consistent. (stuartarchibald)
PR #7829: CUDA: Support Enum/IntEnum in Kernel (Michael Wang)
PR #7833: Add version support information table to docs. (stuartarchibald)
PR #7835: Fix pickling error when module cannot be imported (idorrington)
PR #7836: min() and max() support for np.datetime and np.timedelta (Benjamin Graham)
PR #7837: Initial refactoring of parfor reduction lowering (Siu Kwan Lam)
PR #7845: change time.time() to time.perf_counter() in docs (Nopileos2)
PR #7846: Fix CUDA enum vectorize test on Windows (Graham Markall)
PR #7848: Support for int * list (Nick Riasanovsky)
PR #7850: CUDA: Pass fastmath compiler flag down to compile_ptx and compile_device; Improve fastmath tests (Michael Wang)
PR #7855: Ensure np.argmin/no.argmax return type is intp (stuartarchibald)
PR #7858: CUDA: Deprecate ptx Attribute and Update Tests (Graham Markall Michael Wang)
PR #7861: Fix a spelling mistake in README (Zizheng Guo)
PR #7864: Fix cross_iter_dep check. (Todd A. Anderson)
PR #7865: Remove add_user_function (Graham Markall)
PR #7866: Support for large numbers of args/kws with Python 3.10 (Nick Riasanovsky)
PR #7878: CUDA: Remove some deprecated support, add CC 8.6 and 8.7 (Graham Markall)
PR #7893: Use uuid.uuid4() as the key in serialization. (stuartarchibald)
PR #7895: Remove use of llvmlite.llvmpy (Andre Masella)
PR #7898: Skip test_ptds under cuda-memcheck (Graham Markall)
PR #7901: Pyston compatibility for the test suite (Kevin Modzelewski)
PR #7904: Support m1 (esc)
PR #7911: added sys import (Nightfurex)
PR #7915: CUDA: Fix test checking debug info rendering. (stuartarchibald)
PR #7918: Add JIT examples to CUDA docs (brandon-b-miller Graham Markall)
PR #7919: Disallow //= reductions in pranges. (Todd A. Anderson)
PR #7924: Retain non-modified index tuple components. (Todd A. Anderson)
PR #7939: Fix rendering in feature request template. (stuartarchibald)
PR #7940: Implemented np.allclose in numba/np/arraymath.py (Gagandeep Singh)
PR #7941: Remove debug dump output from closure inlining pass. (stuartarchibald)
PR #7946: instructions for creating a build environment were outdated (esc)
PR #7949: Add Cuda Vector Types (Michael Wang)
PR #7950: mission statement (esc)
PR #7956: Stop using pip for 3.10 on public ci (Revert “start testing Python 3.10 on public CI”) (esc)
PR #7957: Use cloudpickle for disk caches (Siu Kwan Lam)
PR #7958: numpy.clip accept numpy.array for a_min, a_max (Gagandeep Singh)
PR #7959: Permit a new array model to have a super set of array model fields. (stuartarchibald)
PR #7961: numba.typed.typeddict.Dict.get uses castedkey to avoid returning default value even if the key is present (Gagandeep Singh)
PR #7963: remove the roadmap from the sphinx based docs (esc)
PR #7964: Support for large constant dictionaries in Python 3.10 (Nick Riasanovsky)
PR #7965: Use uuid4 instead of PID in cache temp name to prevent collisions. (stuartarchibald)
PR #7971: lru cache for configure call (Tingkai Liu)
PR #7972: Fix fp16 support for cuda shared array (Michael Collison Graham Markall)
PR #7986: Small caching refactor to support target cache implementations (Graham Markall)
PR #7994: Supporting multidimensional arrays in quick sort (Gagandeep Singh Siu Kwan Lam)
PR #7996: Fix binding logic in @overload_glue. (stuartarchibald)
PR #7999: Remove @overload_glue for NumPy allocators. (stuartarchibald)
PR #8003: Add np.broadcast_shapes (Guilherme Leobas)
PR #8004: CUDA fixes for Windows (Graham Markall)
PR #8014: Fix support for {real,imag} array attrs in Parfors. (stuartarchibald)
PR #8016: [Docs] [Very Minor] Make numba.jit boundscheck doc line consistent (Kyle Martin)
PR #8017: Update FAQ to include details about using debug-only option (Guilherme Leobas)
PR #8027: Support for NumPy 1.22 (stuartarchibald)
PR #8031: Support for Numpy BitGenerators PR#1 - Core Generator Support (Kaustubh)
PR #8035: Fix a couple of typos RE implementation (stuartarchibald)
PR #8037: CUDA self-recursion tests (Graham Markall)
PR #8044: Make Python 3.10 kwarg peephole less restrictive (Nick Riasanovsky)
PR #8046: Fix caching test failures (Siu Kwan Lam)
PR #8049: support str(bool) syntax (LI Da)
PR #8052: Ensure pthread is linked in when building for ppc64le. (Siu Kwan Lam)
PR #8056: Move caching tests from test_dispatcher to test_caching (Graham Markall)
PR #8057: Fix coverage checking (Graham Markall)
PR #8064: Rename “nb:run_pass” to “numba:run_pass” and document it. (Siu Kwan Lam)
PR #8065: Fix PyLowering mishandling starargs (Siu Kwan Lam)
PR #8068: update changelog for 0.55.2 (esc)
PR #8077: change return type of np.broadcast_shapes to a tuple (Guilherme Leobas)
PR #8080: Fix windows test failure due to timeout when the machine is slow poss… (Siu Kwan Lam)
PR #8081: Fix erroneous array count in parallel gufunc kernel generation. (stuartarchibald)
PR #8089: Support on-disk caching in the CUDA target (Graham Markall)
PR #8097: Exclude libopenblas 0.3.20 on osx-arm64 (esc)
PR #8099: Fix Py_DECREF use in case of error state (for devicearray). (stuartarchibald)
PR #8102: Combine numpy run_constrained in meta.yaml to the run requirements (Siu Kwan Lam)
PR #8109: Pin TBB support with respect to incompatible 2021.6 API. (stuartarchibald)
PR #8118: Update release checklists post 0.55.2 (esc)
PR #8123: Fix CUDA print tests on Windows (Graham Markall)
PR #8124: Add explicit checks to all allocators in the NRT. (stuartarchibald)
PR #8126: Mark gufuncs as having mutable outputs (Andre Masella)
PR #8133: Fix #8132. Regression in Record.make_c_struct for handling nestedarray (Siu Kwan Lam)
PR #8137: CUDA: Fix #7806, Division by zero stops the kernel (Graham Markall)
PR #8142: CUDA: Fix some missed changes from dropping 9.2 (Graham Markall)
PR #8144: Fix NumPy capitalisation in docs. (stuartarchibald)
PR #8145: Allow ufunc builder to use previously JITed function (Andre Masella)
PR #8151: pin NumPy to build 0 of 1.19.2 on public CI (esc)
PR #8163: CUDA: Remove context query in launch config (Graham Markall)
PR #8165: Restrict strace based tests to be linux only via support feature. (stuartarchibald)
PR #8170: CUDA: Fix missing space in low occupancy warning (Graham Markall)
PR #8175: make build and upload order consistent (esc)
PR #8181: Fix various typos (luzpaz)
PR #8187: Update CHANGE_LOG for 0.55.2 (stuartarchibald esc)
PR #8189: updated version support information for 0.55.2/0.57 (esc)
PR #8191: CUDA: Update deprecation notes for 0.56. (Graham Markall)
PR #8192: Update CHANGE_LOG for 0.56.0 (stuartarchibald esc Siu Kwan Lam)
PR #8195: Make the workqueue threading backend once again fork safe. (stuartarchibald)
PR #8196: Fix numerical tolerance in parfors caching test. (stuartarchibald)
PR #8197: Fix isinstance warning check test. (stuartarchibald)
PR #8203: pin llvmlite 0.39 for public CI builds (esc)
PR #8255: CUDA: Make numba.cuda.tests.doc_examples.ffi a module to fix #8252 (Graham Markall)
PR #8274: Update version support table doc for 0.56. (stuartarchibald)
PR #8275: Update CHANGE_LOG for 0.56.0 final (stuartarchibald)
Authors:
Andre Masella
Benjamin Graham
brandon-b-miller
Brandon T. Willard
Gagandeep Singh
Dhruv Patel
LI Da
Todd A. Anderson
Ethan Pronovost
esc
Tobias Sargeant
Graham Markall
Guilherme Leobas
Zizheng Guo
Hadia Ahmed
idorrington
Michael Wang
Kaustubh
Kevin Modzelewski
luk-f-a
luzpaz
Kyle Martin
Nightfurex
Nick Riasanovsky
Nopileos2
Ray Bell
readthedocs-assistant
Rishi Kulkarni
Sterling Baird
Siu Kwan Lam
stuartarchibald
Stepan Rakitin
Michael Collison
Tingkai Liu
This is the first version I tested with the re-vived py-llvmlite. This version
works with Pythons below 3.12 so far. Upstream changes since 0.55.2:
Version 0.58.1 (17 October 2023)
This is a maintenance release that adds support for NumPy 1.26 and fixes a bug.
NumPy Support
Support NumPy 1.26
Support for NumPy 1.26 is added.
(PR-#9227)
Bug Fixes
Fixed handling of float default arguments in inline closures
Float default arguments in inline closures would produce incorrect results since updates for Python 3.11 - these are now handled correctly again.
(PR-#9222)
Pull-Requests
PR #9220: Support passing arbitrary flags to NVVM (gmarkall)
PR #9227: Support NumPy 1.26 (PR aimed at review / merge) (Tialo gmarkall)
PR #9228: Fix #9222 - Don’t replace . with _ in func arg names in inline closures (gmarkall)
Authors
gmarkall
Tialo
Version 0.58.0 (20 September 2023)
Table of Contents
Version 0.58.0 (20 September 2023)
Highlights
New Features
Improvements
NumPy Support
CUDA Changes
Bug Fixes
Changes
Deprecations
Pull-Requests
Authors
This is a major Numba release. Numba now uses towncrier to create the release notes, so please find a summary of all noteworthy items below.
Highlights
Added towncrier
This PR adds towncrier as a GitHub workflow for checking release notes. From this PR onwards every PR made in Numba will require a appropriate release note associated with it. The reviewer may decide to skip adding release notes in smaller PRs with minimal impact by addition of a skip_release_notes label to the PR.
(PR-#8792)
The minimum supported NumPy version is 1.22.
Following NEP-0029, the minimum supported NumPy version is now 1.22.
(PR-#9093)
Add support for NumPy 1.25
Extend Numba to support new and changed features released in NumPy 1.25.
(PR-#9011)
Remove NVVM 3.4 and CTK 11.0 / 11.1 support
Support for CUDA toolkits < 11.2 is removed.
(PR-#9040)
Removal of Windows 32-bit Support
This release onwards, Numba has discontinued support for Windows 32-bit operating systems.
(PR-#9083)
The minimum llvmlite version is now 0.41.0.
The minimum required version of llvmlite is now version 0.41.0.
(PR-#8916)
Added RVSDG-frontend
This PR is a preliminary work on adding a RVSDG-frontend for processing bytecode. RVSDG (Regionalized Value-State Dependence Graph) allows us to have a dataflow-centric view instead of a traditional SSA-CFG view. This allows us to simplify the compiler in the future.
(PR-#9012)
New Features
numba.experimental.jitclass gains support for __*matmul__ methods.
numba.experimental.jitclass now has support for the following methods:
__matmul__
__imatmul__
__rmatmul__
(PR-#8892)
numba.experimental.jitclass gains support for reflected “dunder” methods.
numba.experimental.jitclass now has support for the following methods:
__radd__
__rand_
__rfloordiv__
__rlshift__
__ror_
__rmod_
__rmul_
__rpow_
__rrshift_
__rsub_
__rtruediv_
__rxor_
(PR-#8906)
Add support for value max to NUMBA_OPT.
The optimisation level that Numba applies when compiling can be set through the environment variable NUMBA_OPT. This has historically been a value between 0 and 3 (inclusive). Support for the value max has now been added, this is a Numba-specific optimisation level which indicates that the user would like Numba to try running the most optimisation possible, potentially trading a longer compilation time for better run-time performance. In practice, use of the max level of optimisation may or may not benefit the run-time or compile-time performance of user code, but it has been added to present an easy to access option for users to try if they so wish.
(PR-#9094)
Improvements
Updates to numba.core.pythonapi.
Support for Python C-API functions PyBytes_AsString and PyBytes_AsStringAndSize is added to numba.core.pythonapi.PythonAPI as bytes_as_string and bytes_as_string_and_size methods respectively.
(PR-#8462)
Support for isinstance is now non-experimental.
Support for the isinstance built-in function has moved from being considered an experimental feature to a fully supported feature.
(PR-#8911)
NumPy Support
All modes are supported in numpy.correlate and numpy.convolve.
All values for the mode argument to numpy.correlate and numpy.convolve are now supported.
(PR-#7543)
@vectorize accommodates arguments implementing __array_ufunc__.
Universal functions (ufuncs) created with numba.vectorize will now respect arguments implementing __array_ufunc__ (NEP-13) to allow pre- and post-processing of arguments and return values when the ufunc is called from the interpreter.
(PR-#8995)
Added support for np.geomspace function.
This PR improves on #4074 by adding support for np.geomspace. The current implementation only supports scalar start and stop parameters.
(PR-#9068)
Added support for np.vsplit, np.hsplit, np.dsplit.
This PR improves on #4074 by adding support for np.vsplit, np.hsplit, and np.dsplit.
(PR-#9082)
Added support for np.row_stack function.
Support is added for numpy.row_stack.
(PR-#9085)
Added support for functions np.polynomial.polyutils.trimseq, as well as functions polyadd, polysub, polymul from np.polynomial.polynomial.
Support is added for np.polynomial.polyutils.trimseq, np.polynomial.polynomial.polyadd, np.polynomial.polynomial.polysub, np.polynomial.polynomial.polymul.
(PR-#9087)
Added support for np.diagflat function.
Support is added for numpy.diagflat.
(PR-#9113)
Added support for np.resize function.
Support is added for numpy.resize.
(PR-#9118)
Add np.trim_zeros
Support for np.trim_zeros() is added.
(PR-#9074)
CUDA Changes
Bitwise operation ufunc support for the CUDA target.
Support is added for some ufuncs associated with bitwise operation on the CUDA target. Namely:
numpy.bitwise_and
numpy.bitwise_or
numpy.bitwise_not
numpy.bitwise_xor
numpy.invert
numpy.left_shift
numpy.right_shift
(PR-#8974)
Add support for the latest CUDA driver codes.
Support is added for the latest set of CUDA driver codes.
(PR-#8988)
Add NumPy comparison ufunc in CUDA
this PR adds support for comparison ufuncs for the CUDA target (eg. numpy.greater, numpy.greater_equal, numpy.less_equal, etc.).
(PR-#9007)
Report absolute path of libcuda.so on Linux
numba -s now reports the absolute path to libcuda.so on Linux, to aid troubleshooting driver issues, particularly on WSL2 where a Linux driver can incorrectly be installed in the environment.
(PR-#9034)
Add debuginfo support to nvdisasm output.
Support is added for debuginfo (source line and inlining information) in functions that make calls through nvdisasm. For example the CUDA dispatcher .inspect_sass method output is now augmented with this information.
(PR-#9035)
Add CUDA SASS CFG Support
This PR adds support for getting the SASS CFG in dot language format. It adds an inspect_sass_cfg() method to CUDADispatcher and the -cfg flag to the nvdisasm command line tool.
(PR-#9051)
Support NVRTC using the ctypes binding
NVRTC can now be used when the ctypes binding is in use, enabling float16, and linking CUDA C / C++ sources without needing the NVIDIA CUDA Python bindings.
(PR-#9086)
Fix CUDA atomics tests with toolkit 12.2
CUDA 12.2 generates slightly different PTX for some atomics, so the relevant tests are updated to look for the correct instructions when 12.2 is used.
(PR-#9088)
Bug Fixes
Handling of different sized unsigned integer indexes are fixed in numba.typed.List.
An issue with the order of truncation/extension and casting of unsigned integer indexes in numba.typed.List has been fixed.
(PR-#7262)
Prevent invalid fusion
This PR fixes an issue in which an array first read in a parfor and later written in the same parfor would only be classified as used in the parfor. When a subsequent parfor also used the same array then fusion of the parfors was happening which should have been forbidden given that that the first parfor was also writing to the array. This PR treats such arrays in a parfor as being both used and defined so that fusion will be prevented.
(PR-#7582)
The numpy.allclose implementation now correctly handles default arguments.
The implementation of numpy.allclose is corrected to use TypingError to report typing errors.
(PR-#8885)
Add type validation to numpy.isclose.
Type validation is added to the implementation of numpy.isclose.
(PR-#8944)
Fix support for overloading dispatcher with non-compatible first-class functions
Fixes an error caused by not handling compilation error during casting of Dispatcher objects into first-class functions. With the fix, users can now overload a dispatcher with non-compatible first-class functions. Refer to https://github.com/numba/numba/issues/9071 for details.
(PR-#9072)
Support dtype keyword argument in numpy.arange with parallel=True
Fixes parfors transformation to support the use of dtype keyword argument in numpy.arange(..., dtype=dtype).
(PR-#9095)
Fix all @overloads to use parameter names that match public APIs.
Some of the Numba @overloads for functions in NumPy and Python’s built-ins were written using parameter names that did not match those used in API they were overloading. The result of this being that calling a function with such a mismatch using the parameter names as key-word arguments at the call site would result in a compilation error. This has now been universally fixed throughout the code base and a unit test is running with a best-effort attempt to prevent reintroduction of similar mistakes in the future. Fixed functions include:
From Python built-ins:
complex
From the Python random module:
random.seed
random.gauss
random.normalvariate
random.randrange
random.randint
random.uniform
random.shuffle
From the numpy module:
numpy.argmin
numpy.argmax
numpy.array_equal
numpy.average
numpy.count_nonzero
numpy.flip
numpy.fliplr
numpy.flipud
numpy.iinfo
numpy.isscalar
numpy.imag
numpy.real
numpy.reshape
numpy.rot90
numpy.swapaxes
numpy.union1d
numpy.unique
From the numpy.linalg module:
numpy.linalg.norm
numpy.linalg.cond
numpy.linalg.matrix_rank
From the numpy.random module:
numpy.random.beta
numpy.random.chisquare
numpy.random.f
numpy.random.gamma
numpy.random.hypergeometric
numpy.random.lognormal
numpy.random.pareto
numpy.random.randint
numpy.random.random_sample
numpy.random.ranf
numpy.random.rayleigh
numpy.random.sample
numpy.random.shuffle
numpy.random.standard_gamma
numpy.random.triangular
numpy.random.weibull
(PR-#9099)
Changes
Support for @numba.extending.intrinsic(prefer_literal=True)
In the high level extension API, the prefer_literal option is added to the numba.extending.intrinsic decorator to prioritize the use of literal types when available. This has the same behavior as in the prefer_literal option in the numba.extending.overload decorator.
(PR-#6647)
Deprecations
Deprecation of old-style NUMBA_CAPTURED_ERRORS
Added deprecation schedule of NUMBA_CAPTURED_ERRORS=old_style. NUMBA_CAPTURED_ERRORS=new_style will become the default in future releases. Details are documented at https://numba.readthedocs.io/en/stable/reference/deprecation.html#deprecation-of-old-style-numba-captured-errors
(PR-#9090)
Pull-Requests
PR #6647: Support prefer_literal option for intrinsic decorator (ashutoshvarma sklam)
PR #7262: fix order of handling and casting (esc)
PR #7543: Support for all modes in np.correlate and np.convolve (jeertmans)
PR #7582: Use get_parfor_writes to detect illegal array access that prevents fusion. (DrTodd13)
PR #8371: Added binomial distribution (esc kc611)
PR #8462: Add PyBytes_AsString and PyBytes_AsStringAndSize (ianna)
PR #8633: DOC: Convert vectorize and guvectorize examples to doctests (Matt711)
PR #8730: Update dev-docs (sgbaird esc)
PR #8792: Added towncrier as a github workflow (kc611)
PR #8854: Updated mk_alloc to support Numba-Dpex compute follows data. (mingjie-intel)
PR #8861: CUDA: Don’t add device kwarg for jit registry (gmarkall)
PR #8871: Don’t return the function in CallConv.decorate_function() (gmarkall)
PR #8885: Fix np.allclose not handling default args (guilhermeleobas)
PR #8892: Add support for __*matmul__ methods in jitclass (louisamand)
PR #8895: CUDA: Enable caching functions that use CG (gmarkall)
PR #8906: Add support for reflected dunder methods in jitclass (louisamand)
PR #8911: Remove isinstance experimental feature warning (guilhermeleobas)
PR #8916: Bump llvmlite requirement to 0.41.0dev0 (sklam)
PR #8925: Update release checklist template (sklam)
PR #8937: Remove old Website development documentation (esc gmarkall)
PR #8944: Add exceptions to np.isclose (guilhermeleobas)
PR #8974: CUDA: Add binary ufunc support (Matt711)
PR #8976: Fix index URL for ptxcompiler/cubinlinker packages. (bdice)
PR #8978: Import MVC packages when using MVCLinker. (bdice)
PR #8983: Fix typo in deprecation.rst (dsgibbons)
PR #8988: support for latest CUDA driver codes #8363 (s1Sharp)
PR #8995: Allow libraries that implement __array_ufunc__ to override DUFunc.__c… (jpivarski)
PR #9007: CUDA: Add comparison ufunc support (Matt711)
PR #9012: RVSDG-frontend (sklam)
PR #9021: update the release checklist following 0.57.1rc1 (esc)
PR #9022: fix: update the C++ ABI repo reference (emmanuel-ferdman)
PR #9028: Replace use of imp module removed in 3.12 (hauntsaninja)
PR #9034: CUDA libs test: Report the absolute path of the loaded libcuda.so on Linux, + other improvements (gmarkall)
PR #9035: CUDA: Allow for debuginfo in nvdisasm output (Matt711)
PR #9037: Recognize additional functions as being pure or not having side effects. (DrTodd13)
PR #9039: Correct git clone link in installation instructions. (ellifteria)
PR #9040: Remove NVVM 3.4 and CTK 11.0 / 11.1 support (gmarkall)
PR #9046: copy the change log changes for 0.57.1 to main (esc)
PR #9050: Update CODEOWNERS (sklam)
PR #9051: Add CUDA CFG support (Matt711)
PR #9056: adding weekly meeting notes script (esc)
PR #9068: Adding np.geomspace (KrisMinchev)
PR #9069: Fix towncrier error due to importlib_resources upgrade (sklam)
PR #9072: Fix support for overloading dispatcher with non-compatible first-class functions (gmarkall sklam)
PR #9074: Add np.trim_zeros (sungraek guilhermeleobas)
PR #9082: Add np.vsplit, np.hsplit, and np.dsplit (KrisMinchev)
PR #9083: Removed windows 32 references from code and documentation (kc611)
PR #9085: Add tests for np.row_stack (KrisMinchev)
PR #9086: Support NVRTC using ctypes binding (testhound gmarkall)
PR #9087: Add trimseq from np.polynomial.polyutils and polyadd, polysub, polymul from np.polynomial.polynomial (KrisMinchev)
PR #9088: Fix: Issue 9063 - CUDA atomics tests failing with CUDA 12.2 (gmarkall)
PR #9090: Add deprecation notice for old_style error capturing. (esc sklam)
PR #9094: Add support for a ‘max’ level to NUMBA_OPT environment variable. (stuartarchibald)
PR #9095: Support dtype keyword in arange_parallel_impl (DrTodd13 sklam)
PR #9105: NumPy 1.25 support (PR #9011) continued (gmarkall apmasell)
PR #9111: Fixes ReST syntax error in PR#9099 (stuartarchibald gmarkall sklam apmasell)
PR #9112: Fixups for PR#9100 (stuartarchibald sklam)
PR #9113: Add support for np.diagflat (KrisMinchev)
PR #9114: update np min to 122 (stuartarchibald esc)
PR #9117: Fixed towncrier template rendering (kc611)
PR #9118: Add support for np.resize() (KrisMinchev)
PR #9120: Update conda-recipe for numba-rvsdg (sklam)
PR #9127: Fix accidental cffi test deps, refactor cffi skipping (gmarkall)
PR #9128: Merge rvsdg_frontend branch to main (esc sklam)
PR #9152: Fix old_style error capturing deprecation warnings (sklam)
PR #9159: Fix uncaught exception in find_file() (gmarkall)
PR #9173: Towncrier fixups (Continue #9158 and retarget to main branch) (sklam)
PR #9181: Remove extra decrefs in RNG (sklam)
PR #9190: Fix issue with incompatible multiprocessing context in test. (stuartarchibald)
Authors
apmasell
ashutoshvarma
bdice
DrTodd13
dsgibbons
ellifteria
emmanuel-ferdman
esc
gmarkall
guilhermeleobas
hauntsaninja
ianna
jeertmans
jpivarski
jtilly
kc611
KrisMinchev
louisamand
Matt711
mingjie-intel
s1Sharp
sgbaird
sklam
stuartarchibald
sungraek
testhound
Version 0.57.1 (21 June, 2023)
Pull-Requests:
PR #8964: fix missing nopython keyword in cuda random module (esc)
PR #8965: fix return dtype for np.angle (guilhermeleobas esc)
PR #8982: Don’t do the parfor diagnostics pass for the parfor gufunc. (DrTodd13)
PR #8996: adding a test for 8940 (esc)
PR #8958: resurrect the import, this time in the registry initialization (esc)
PR #8947: Introduce internal _isinstance_no_warn (guilhermeleobas esc)
PR #8998: Fix 8939 (second attempt) (esc)
PR #8978: Import MVC packages when using MVCLinker. (bdice)
PR #8895: CUDA: Enable caching functions that use CG (gmarkall)
PR #8976: Fix index URL for ptxcompiler/cubinlinker packages. (bdice)
PR #9004: Skip MVC test when libraries unavailable (gmarkall esc)
PR #9006: link to version support table instead of using explicit versions (esc)
PR #9005: Fix: Issue #8923 - avoid spurious device-to-host transfers in CUDA ufuncs (gmarkall)
Authors:
bdice
DrTodd13
esc
gmarkall
Version 0.57.0 (1 May, 2023)
This release continues to add new features, bug fixes and stability improvements to Numba. Please note that this release contains a significant number of both deprecation and pending-deprecation notices with view of making it easier to develop new technology for Numba in the future. Also note that this will be the last release to support Windows 32-bit packages produced by the Numba team.
Highlights of core dependency upgrades:
Support for Python 3.11 (minimum is moved to 3.8)
Support for NumPy 1.24 (minimum is moved to 1.21)
Python language support enhancements:
Exception classes now support arguments that are not compile time constant.
The built-in functions hasattr and getattr are supported for compile time constant attributes.
The built-in functions str and repr are now implemented similarly to their Python implementations. Custom __str__ and __repr__ functions can be associated with types and work as expected.
Numba’s unicode functionality in str.startswith now supports kwargs start and end.
min and max now support boolean types.
Support is added for the dict(iterable) constructor.
NumPy features/enhancements:
The largest set of new features is within the numpy.random.Generator support, the vast majority of commonly used distributions are now supported. Namely:
Generator.beta
Generator.chisquare
Generator.exponential
Generator.f
Generator.gamma
Generator.geometric
Generator.integers
Generator.laplace
Generator.logistic
Generator.lognormal
Generator.logseries
Generator.negative_binomial
Generator.noncentral_chisquare
Generator.noncentral_f
Generator.normal
Generator.pareto
Generator.permutation
Generator.poisson
Generator.power
Generator.random
Generator.rayleigh
Generator.shuffle
Generator.standard_cauchy
Generator.standard_exponential
Generator.standard_gamma
Generator.standard_normal
Generator.standard_t
Generator.triangular
Generator.uniform
Generator.wald
Generator.weibull
Generator.zipf
The nbytes property on NumPy ndarray types is implemented.
Nesting of nested-array types is now supported.
datetime and timedelta types can be cast to int.
F-order iteration is supported in ufunc generation for increased performance when using combinations of predominantly F-order arrays.
The following functions are also now supported:
np.argpartition
np.isclose
np.nan_to_num
np.new_axis
np.union1d
Highlights of core changes:
A large amount of refactoring has taken place to convert many of Numba’s internal implementations, of both Python and NumPy functions, from the low-level extension API to the high-level extension API (numba.extending).
The __repr__ method is supported for Numba types.
The default target for applicable functions in the extension API (numba.extending) is now "generic". This means that @overload* and @intrinsic functions will by default be accepted by both the CPU and CUDA targets.
The use of __getitem__ on Numba types is now supported in compiled code. i.e. types.float64[:, ::1] is now compilable.
Performance:
The performance of str.find() and str.rfind() has been improved.
Unicode support for __getitem__ now avoids allocation and returns a view.
The numba.typed.Dict dictionary now accepts an n_keys option to enable allocating the dictionary instance to a predetermined initial size (useful to avoid resizes!).
The Numba Run-time (NRT) has been improved in terms of performance and safety:
The NRT internal statistics counters are now off by default (removes atomic lock contentions).
Debug cache line filling is off by default.
The NRT is only compiled once a compilation starts opposed to at function decoration time, this improves import speed.
The NRT allocation calls are all made through a “checked” layer by default.
CUDA:
New NVIDIA hardware and software compatibility / support:
Toolkits: CUDA 11.8 and 12, with Minor Version Compatibility for 11.x.
Packaging: NVIDIA-packaged CUDA toolkit conda packages.
Hardware: Hopper, Ada Lovelace, and AGX Orin.
float16 support:
Arithmetic operations are now fully supported.
A new method, is_fp16_supported(), and device property, supports_float16, for checking the availability of float16 support.
Functionality:
The high-level extension API is now fully-supported in the CUDA target.
Eager compilation of multiple signatures, multiple outputs from generalized ufuncs, and specifying the return type of ufuncs are now supported.
A limited set of NumPy ufuncs (trigonometric functions) can now be called inside kernels.
Lineinfo quality improvement: enabling lineinfo no longer results in any changes to generated code.
Deprecations:
The numba.pycc module and everything in it is now pending deprecation.
The long awaited full deprecation of object mode fall-back is underway. This change means @jit with no keyword arguments will eventually alias @njit.
The @generated_jit decorator is deprecated as the Numba extension API provides a better supported superset of the same functionality, particularly through @numba.extending.overload.
Version support/dependency changes:
The setuptools package is now an optional run-time dependency opposed to a required run-time dependency.
The TBB threading-layer now requires version 2021.6 or later.
LLVM 14 is now supported on all platforms via llvmlite.
Pull-Requests:
PR #5113: Fix error handling in the Interval extending example (esc eric-wieser)
PR #5544: Add support for np.union1d (shangbol gmarkall)
PR #7009: Add writable args (dmbelov)
PR #7067: Implement np.isclose (guilhermeleobas)
PR #7255: CUDA: Support CUDA Toolkit conda packages from NVIDIA (gmarkall)
PR #7622: Support fortran loop ordering for ufunc generation (sklam)
PR #7733: fix for /tmp/tmp access issues (ChiCheng45)
PR #7884: Implement getattr builtin. (stuartarchibald)
PR #7885: Adds CUDA FP16 arithmetic operators (testhound)
PR #7920: Drop pre-3.7 code path (CPU only) (sklam)
PR #8001: CUDA fp16 math functions (testhound gmarkall)
PR #8010: Add support for fp16 comparison native operators (testhound)
PR #8024: Allow converting NumPy datetimes to int (apmasell)
PR #8038: Support for Numpy BitGenerators PR#2: Standard Distributions support (kc611)
PR #8040: Support for Numpy BitGenerators PR#3: Advanced Distributions Support. (kc611)
PR #8041: Support for Numpy BitGenerators PR#4: Generator().integers() Support. (kc611)
PR #8042: Support for NumPy BitGenerators PR#5: Generator Shuffling Methods. (kc611)
PR #8061: Migrate random glue_lowering to overload where easy (apmasell)
PR #8106: Remove injection of atomic JIT functions into NRT memsys. (stuartarchibald)
PR #8120: Support nesting of nested array types (gmarkall)
PR #8134: Support non-constant exception values in JIT (guilhermeleobas sklam)
PR #8147: Adds size variable at runtime for arrays that cannot be inferred (njriasan)
PR #8154: Testhound/native cast 8138 (testhound)
PR #8158: adding -pthread for linux-ppc64le in setup.py (esc)
PR #8164: remove myself from automatic reviewer assignment (esc)
PR #8167: CUDA: Facilitate and document passing arrays / pointers to foreign functions (gmarkall)
PR #8180: CUDA: Initial support for Minor Version Compatibility (gmarkall)
PR #8183: Add n_keys option to Dict.empty() (stefanfed gmarkall)
PR #8198: Update the release template to include updating the version table. (stuartarchibald)
PR #8200: Make the NRT use the “unsafe” allocation API by default. (stuartarchibald)
PR #8201: Bump llvmlite dependency to 0.40.dev0 for Numba 0.57.0dev0 (stuartarchibald)
PR #8207: development tag should be in monofont (esc)
PR #8212: release checklist: include a note to ping @RC_testers on discourse (esc)
PR #8216: chore: Set permissions for GitHub actions (naveensrinivasan)
PR #8217: Fix syntax in docs (jorgepiloto)
PR #8220: Added the interval example as doctest (kc611)
PR #8221: CUDA stubs docstring: Replace illegal escape sequence (gmarkall)
PR #8228: Fix typo in @vectorize docstring and a NumPy spelling. (stuartarchibald)
PR #8229: Remove mk_unique_var in inline_closurecall.py (sklam)
PR #8234: Replace @overload_glue by @overload for 20 NumPy functions (guilhermeleobas)
PR #8235: Make the NRT stats counters optional. (stuartarchibald)
PR #8238: Advanced Indexing Support #1 (kc611)
PR #8240: Add get_shared_mem_per_block method to Dispatcher (testhound)
PR #8241: Reorder typeof checks to avoid infinite loops on StructrefProxy __hash__ (DannyWeitekamp)
PR #8243: Add a note to reference/numpysupported.rst ()
PR #8245: Fix links in CONTRIBUTING.md ()
PR #8247: Fix issue 8127 (bszollosinagy)
PR #8250: Fix issue 8161 (bszollosinagy)
PR #8253: CUDA: Verify NVVM IR prior to compilation (gmarkall)
PR #8255: CUDA: Make numba.cuda.tests.doc_examples.ffi a module to fix #8252 (gmarkall)
PR #8256: Migrate linear algebra functions from glue_lowering (apmasell)
PR #8258: refactor np.where to use overload (guilhermeleobas)
PR #8259: Add np.broadcast_to(scalar_array, ()) (guilhermeleobas)
PR #8264: remove mk_unique_var from parfor_lowering_utils.py (guilhermeleobas)
PR #8265: Remove mk_unique_var from array_analysis.py (guilhermeleobas)
PR #8266: Remove mk_unique_var in untyped_passes.py (guilhermeleobas)
PR #8267: Fix segfault for invalid axes in np.split (aseyboldt)
PR #8271: Implement some CUDA intrinsics with @overload, @overload_attribute, and @intrinsic (gmarkall)
PR #8274: Update version support table doc for 0.56. (stuartarchibald)
PR #8275: Update CHANGE_LOG for 0.56.0 final (stuartarchibald)
PR #8283: Clean up / remove support for old NumPy versions (gmarkall)
PR #8287: Drop CUDA 10.2 (gmarkall)
PR #8289: Revert #8265. (stuartarchibald)
PR #8290: CUDA: Replace use of deprecated NVVM IR features, questionable constructs (gmarkall)
PR #8292: update checklist (esc)
PR #8294: CUDA: Add trig ufunc support (gmarkall)
PR #8295: Add get_const_mem_size method to Dispatcher (testhound gmarkall)
PR #8297: Add __name__ attribute to CUDAUFuncDispatcher and test case (testhound)
PR #8299: Fix build for mingw toolchain (Biswa96)
PR #8302: CUDA: Revert numba_nvvm intrinsic name workaround (gmarkall)
PR #8308: CUDA: Support for multiple signatures (gmarkall)
PR #8315: Add get_local_mem_per_thread method to Dispatcher (testhound)
PR #8319: Bump minimum supported Python version to 3.8 (esc stuartarchibald jamesobutler)
PR #8320: Add __name__ support for GUFuncs (testhound)
PR #8321: Fix literal_unroll pass erroneously exiting on non-conformant loop. (stuartarchibald)
PR #8325: Remove use of mk_unique_var in stencil.py (bszollosinagy)
PR #8326: Remove mk_unique_var from parfor_lowering.py (guilhermeleobas)
PR #8331: Extend docs with info on how to call C functions from Numba (guilhermeleobas)
PR #8334: Add dict(*iterable) constructor (guilhermeleobas)
PR #8335: Remove deprecated pycc script and related source. (stuartarchibald)
PR #8336: Fix typos of “Generalized” in GUFunc-related code (gmarkall)
PR #8338: Calculate reductions before fusion so that use of reduction vars can stop fusion. (DrTodd13)
PR #8339: Fix #8291 parfor leak of redtoset variable (sklam)
PR #8341: CUDA: Support multiple outputs for Generalized Ufuncs (gmarkall)
PR #8343: Eliminate references to type annotation in compile_ptx (testhound)
PR #8348: Add get_max_threads_per_block method to Dispatcher (testhound)
PR #8354: pin setuptools to < 65 and switch from mamba to conda on RTD (esc gmarkall)
PR #8357: Clean up the buildscripts directory. (stuartarchibald)
PR #8359: adding warnings about cache behaviour (luk-f-a)
PR #8368: Remove glue_lowering in random math that requires IR (apmasell)
PR #8376: Fix issue 8370 (bszollosinagy)
PR #8387: Add support for compute capability in IR Lowering (testhound)
PR #8388: Remove more references to the pycc binary. (stuartarchibald)
PR #8389: Make C++ extensions compile with correct compiler (apmasell)
PR #8390: Use NumPy logic for lessthan in sort to move NaNs to the back. (sklam)
PR #8401: Remove Cuda toolkit version check (testhound)
PR #8415: Refactor numba.np.arraymath methods from lower_builtins to overloads (kc611)
PR #8418: Fixes ravel failure on 1d arrays (#5229) (cako)
PR #8421: Update release checklist: add a task to check dependency pinnings on subsequent releases (e.g. PATCH) (esc)
PR #8422: Switch public CI builds to use gdb from conda packages. (stuartarchibald)
PR #8423: Remove public facing and CI references to 32 bit linux support. (stuartarchibald, in addition, we are grateful for the contribution of jamesobutler towards a similar goal in PR #8319)
PR #8425: Post 0.56.2 cleanup (esc)
PR #8427: Shorten the time to verify test discovery. (stuartarchibald)
PR #8429: changelog generator script (esc)
PR #8431: Replace @overload_glue by @overload for np.linspace and np.take (guilhermeleobas)
PR #8432: Refactor carray/farray to use @overload (guilhermeleobas)
PR #8435: Migrate np.atleast_? functions from glue_lowering to overload (apmasell)
PR #8438: Make the initialisation of the NRT more lazy for the njit decorator. (stuartarchibald)
PR #8439: Update the contributing docs to include a policy on formatting changes. (stuartarchibald)
PR #8440: [DOC]: Replaces icc_rt with intel-cmplr-lib-rt (oleksandr-pavlyk)
PR #8442: Implement hasattr(), str() and repr(). (stuartarchibald)
PR #8446: add version info in ImportError’s (raybellwaves)
PR #8450: remove GitHub username from changelog generation script (esc)
PR #8467: Convert implementations using generated_jit to overload (gmarkall)
PR #8468: Reference test suite in installation documentation (apmasell)
PR #8469: Correctly handle optional types in parfors lowering (apmasell)
PR #8473: change the include style in _pymodule.h and remove unused or duplicate headers in two header files ()
PR #8476: Make setuptools optional at runtime. (stuartarchibald)
PR #8490: Restore installing SciPy from defaults instead of conda-forge on public CI (esc)
PR #8494: Remove context.compile_internal where easy on numba/cpython/cmathimpl.py (guilhermeleobas)
PR #8495: Removes context.compile_internal where easy on numba/cpython/listobj.py (guilhermeleobas)
PR #8496: Rewrite most of the set API to use overloads (guilhermeleobas)
PR #8499: Deprecate numba.generated_jit (stuartarchibald)
PR #8508: This updates the release checklists to capture some more checks. (stuartarchibald)
PR #8513: Added support for numpy.newaxis (kc611)
PR #8517: make some typedlist C-APIs public ()
PR #8518: Adjust stencil tests to use hardcoded python source opposed to AST. (stuartarchibald)
PR #8520: Added noncentral-chisquared, noncentral-f and logseries distributions (kc611)
PR #8522: Import jitclass from numba.experimental in jitclass documentation (armgabrielyan)
PR #8524: Fix grammar in stencil.rst (armgabrielyan)
PR #8525: Making CUDA specific datamodel manager (sklam)
PR #8526: Fix broken url (Nimrod0901)
PR #8527: Fix grammar in troubleshoot.rst (armgabrielyan)
PR #8532: Vary NumPy version on gpuCI (gmarkall)
PR #8535: LLVM14 (apmasell)
PR #8536: Fix fusion bug. (DrTodd13)
PR #8539: Fix #8534, np.broadcast_to should update array size attr. (stuartarchibald)
PR #8541: Remove restoration of “free” channel in Azure CI windows builds. (stuartarchibald)
PR #8542: CUDA: Make arg optional for Stream.add_callback() (gmarkall)
PR #8544: Remove reliance on npy_<impl> ufunc loops. (stuartarchibald)
PR #8545: Py3.11 basic support (esc sklam)
PR #8547: [Unicode] Add more string view usages for unicode operations ()
PR #8549: Fix rstcheck in Azure CI builds, update sphinx dep and docs to match (stuartarchibald)
PR #8550: Changes how tests are split between test instances (apmasell)
PR #8554: Make target for @overload have ‘generic’ as default. (stuartarchibald gmarkall)
PR #8557: [Unicode] support startswith with args, start and end. ()
PR #8566: Update workqueue abort message on concurrent access. (stuartarchibald)
PR #8572: CUDA: Reduce memory pressure from local memory tests (gmarkall)
PR #8579: CUDA: Add CUDA 11.8 / Hopper support and required fixes (gmarkall)
PR #8580: adding note about doing a wheel test build prior to tagging (esc)
PR #8583: Skip tests that contribute to M1 RuntimeDyLd Assertion error (sklam)
PR #8587: Remove unused refcount removal code, clean core/cpu.py module. (stuartarchibald)
PR #8588: Remove lowering extension hooks, replace with pass infrastructure. (stuartarchibald)
PR #8590: Py3.11 support continues (sklam)
PR #8592: fix failure of test_cache_invalidate due to read-only install (tpwrules)
PR #8593: Adjusted ULP precesion for noncentral distribution test (kc611)
PR #8594: Fix various CUDA lineinfo issues (gmarkall)
PR #8597: Prevent use of NumPy’s MaskedArray. (stuartarchibald)
PR #8598: Setup Azure CI to test py3.11 (sklam)
PR #8600: Chrome trace timestamp should be in microseconds not seconds. (sklam)
PR #8602: Throw error for unsupported dunder methods (apmasell)
PR #8605: Support for CUDA fp16 math functions (part 1) (testhound)
PR #8606: [Doc] Make the RewriteArrayExprs doc more precise ()
PR #8619: Added flat iteration logic for random distributions (kc611)
PR #8623: Adds support for np.nan_to_num (thomasjpfan)
PR #8624: DOC: Add guvectorize scalar return example (Matt711)
PR #8625: Refactor test_ufuncs (gmarkall)
PR #8626: [unicode-PERF]: use optmized BM algorithm to replace the brute-force finder (dlee992)
PR #8630: Fix #8628: Don’t test math.trunc with non-float64 NumPy scalars (gmarkall)
PR #8634: Add new method is_fp16_supported (testhound)
PR #8636: CUDA: Skip test_ptds on Windows (gmarkall)
PR #8639: Python 3.11 - fix majority of remaining test failures. (stuartarchibald)
PR #8644: Fix bare reraise support (sklam)
PR #8649: Remove numba.core.overload_glue module. (apmasell)
PR #8659: Preserve module name of jitted class (neilflood)
PR #8661: Make external compiler discovery lazy in the test suite. (stuartarchibald)
PR #8662: Add support for .nbytes accessor for numpy arrays (alanhdu)
PR #8666: Updates for Python 3.8 baseline/Python 3.11 migration (stuartarchibald)
PR #8673: Enable the CUDA simulator tests on Windows builds in Azure CI. (stuartarchibald)
PR #8675: Make always_run test decorator a tag and improve shard tests. (stuartarchibald)
PR #8677: Add support for min and max on boolean types. (DrTodd13)
PR #8680: Adjust flake8 config to be compatible with flake8=6.0.0 (thomasjpfan)
PR #8685: Implement __repr__ for numba types (luk-f-a)
PR #8691: NumPy 1.24 (gmarkall)
PR #8697: Close stale issues after 7 days (gmarkall)
PR #8701: Relaxed ULP testing precision for NumPy Generator tests across all systems (kc611)
PR #8702: Supply concrete timeline for objmode fallback deprecation/removal. (stuartarchibald)
PR #8706: Fix doctest for @vectorize (sklam)
PR #8711: Python 3.11 tracing support (continuation of #8670). (AndrewVallette sklam)
PR #8716: CI: Use set -e in “Before Install” step and fix install (gmarkall)
PR #8720: Enable coverage for subprocess testing (sklam)
PR #8723: Check for void return type in cuda.compile_ptx (brandonwillard)
PR #8726: Make Numba dependency check run ahead of Numba internal imports. (stuartarchibald)
PR #8728: Fix flake8 checks since upgrade to flake8=6.x (stuartarchibald)
PR #8729: Run flake8 CI step in multiple processes. (stuartarchibald)
PR #8732: Add numpy argpartition function support ()
PR #8735: Update bot to close PRs waiting on authors for more than 3 months (guilhermeleobas)
PR #8736: Implement np.lib.stride_tricks.sliding_window_view ()
PR #8744: Update CtypesLinker::add_cu error message to include fp16 usage (testhound gmarkall)
PR #8746: Fix failing test_dispatcher test case (testhound)
PR #8748: Suppress known test failures for py3.11 (sklam)
PR #8751: Recycle test runners more aggressively (apmasell)
PR #8752: Flake8 fixes for py311 branch (esc sklam)
PR #8760: Bump llvmlite PR in py3.11 branch testing (sklam)
PR #8764: CUDA tidy-up: remove some unneeded methods (gmarkall)
PR #8765: BLD: remove distutils (fangchenli)
PR #8766: Stale bot: Use abandoned - stale label for closed PRs (gmarkall)
PR #8771: Update vendored Versioneer from 0.14 to 0.28 (oscargus gmarkall)
PR #8775: Revert PR#8751 for buildfarm stability (sklam)
PR #8780: Improved documentation for Atomic CAS (MiloniAtal)
PR #8781: Ensure gc.collect() is called before checking refcount in tests. (sklam)
PR #8782: Changed wording of the escape error (MiloniAtal)
PR #8786: Upgrade stale GitHub action (apmasell)
PR #8788: CUDA: Fix returned dtype of vectorized functions (Issue #8400) (gmarkall)
PR #8790: CUDA compare and swap with index (ianthomas23)
PR #8795: Add pending-deprecation warnings for numba.pycc (stuartarchibald)
PR #8802: Move the minimum supported NumPy version to 1.21 (stuartarchibald)
PR #8803: Attempted fix to #8789 by changing compile_ptx to accept a signature instead of argument tuple (KyanCheung)
PR #8804: Split parfor pass into 3 parts (DrTodd13)
PR #8809: Update LLVM versions for 0.57 release (apmasell)
PR #8810: Fix llvmlite dependency in meta.yaml (sklam)
PR #8816: Fix some buildfarm test failures (sklam)
PR #8819: Support “static” __getitem__ on Numba types in @njit code. (stuartarchibald)
PR #8822: Merge py3.11 branch to main (esc AndrewVallette stuartarchibald sklam)
PR #8826: CUDA CFFI test: conditionally require cffi module (gmarkall)
PR #8831: Redo py3.11 sync branch with main (sklam)
PR #8833: Fix typeguard import hook location. (stuartarchibald)
PR #8836: Fix failing typeguard test. (stuartarchibald)
PR #8837: Update AzureCI matrix for Python 3.11/NumPy 1.21..1.24 (stuartarchibald)
PR #8839: Add Dynamic Shared Memory example. (k1m190r)
PR #8842: Fix buildscripts, setup.py, docs for setuptools becoming optional. (stuartarchibald)
PR #8843: Pin typeguard to 3.0.1 in AzureCI. (stuartarchibald)
PR #8848: added lifted loops to glossary term (cherieliu)
PR #8852: Disable SLP vectorisation due to miscompilations. (stuartarchibald)
PR #8855: DOC: pip into double backticks in installing.rst (F3eQnxN3RriK)
PR #8856: Update TBB to use >= 2021.6 by default. (kozlov-alexey stuartarchibald)
PR #8858: Update deprecation notice for objmode fallback RE @jit use. (stuartarchibald)
PR #8864: Remove obsolete deprecation notices (gmarkall)
PR #8866: Revise CUDA deprecation notices (gmarkall)
PR #8869: Update CHANGE_LOG for 0.57.0rc1 (stuartarchibald esc gmarkall)
PR #8870: Fix opcode “spelling” change since Python 3.11 in CUDA debug test. (stuartarchibald)
PR #8879: Remove use of compile_isolated from generator tests. (stuartarchibald)
PR #8880: Fix missing dependency guard on pyyaml in test_azure_config. (stuartarchibald)
PR #8881: Replace use of compile_isolated in test_obj_lifetime (sklam)
PR #8884: Pin llvmlite and NumPy on release branch (sklam)
PR #8887: Update PyPI supported version tags (bryant1410)
PR #8896: Remove codecov install (now deleted from PyPI) (gmarkall)
PR #8902: Enable CALL_FUNCTION_EX fix for py3.11 (sklam)
PR #8907: Work around issue #8898. Defer exp2 (and log2) calls to Numba internal symbols. (stuartarchibald)
PR #8909: Fix #8903. NumbaDeprecationWarning``s raised from ``@{gu,}vectorize. (stuartarchibald)
PR #8929: Update CHANGE_LOG for 0.57.0 final. (stuartarchibald)
PR #8930: Fix year in change log (jtilly)
PR #8932: Fix 0.57 release changelog (sklam)
Authors:
alanhdu
AndrewVallette
apmasell
armgabrielyan
aseyboldt
Biswa96
brandonwillard
bryant1410
bszollosinagy
cako
cherieliu
ChiCheng45
DannyWeitekamp
dlee992
dmbelov
DrTodd13
eric-wieser
esc
F3eQnxN3RriK
fangchenli
gmarkall
guilhermeleobas
ianthomas23
jamesobutler
jorgepiloto
jtilly
k1m190r
kc611
kozlov-alexey
KyanCheung
luk-f-a
Matt711
MiloniAtal
naveensrinivasan
neilflood
Nimrod0901
njriasan
oleksandr-pavlyk
oscargus
raybellwaves
shangbol
sklam
stefanfed
stuartarchibald
testhound
thomasjpfan
tpwrules
Version 0.56.4 (3 November, 2022)
This is a bugfix release to fix a regression in the CUDA target in relation to the .view() method on CUDA device arrays that is present when using NumPy version 1.23.0 or later.
Pull-Requests:
PR #8537: Make ol_compatible_view accessible on all targets (gmarkall)
PR #8552: Update version support table for 0.56.4. (stuartarchibald)
PR #8553: Update CHANGE_LOG for 0.56.4 (stuartarchibald)
PR #8570: Release 0.56 branch: Fix overloads with target="generic" for CUDA (gmarkall)
PR #8571: Additional update to CHANGE_LOG for 0.56.4 (stuartarchibald)
Authors:
gmarkall
stuartarchibald
Version 0.56.3 (13 October, 2022)
This is a bugfix release to remove the version restriction applied to the setuptools package and to fix a bug in the CUDA target in relation to copying zero length device arrays to zero length host arrays.
Pull-Requests:
PR #8475: Remove setuptools version pin (gmarkall)
PR #8482: Fix #8477: Allow copies with different strides for 0-length data (gmarkall)
PR #8486: Restrict the TBB development package to supported version in Azure. (stuartarchibald)
PR #8503: Update version support table for 0.56.3 (stuartarchibald)
PR #8504: Update CHANGE_LOG for 0.56.3 (stuartarchibald)
Authors:
gmarkall
stuartarchibald
Version 0.56.2 (1 September, 2022)
This is a bugfix release that supports NumPy 1.23 and fixes CUDA function caching.
Pull-Requests:
PR #8239: Add decorator to run a test in a subprocess (stuartarchibald)
PR #8276: Move Azure to use macos-11 (stuartarchibald)
PR #8310: CUDA: Fix Issue #8309 - atomics don’t work on complex components (Graham Markall)
PR #8342: Upgrade to ubuntu-20.04 for azure pipeline CI (jamesobutler)
PR #8356: Update setup.py, buildscripts, CI and docs to require setuptools<60 (stuartarchibald)
PR #8374: Don’t pickle LLVM IR for CUDA code libraries (Graham Markall)
PR #8377: Add support for NumPy 1.23 (stuartarchibald)
PR #8384: Move strace() check into tests that actually need it (stuartarchibald)
PR #8386: Fix the docs for numba.get_thread_id (stuartarchibald)
PR #8407: Pin NumPy version to 1.18-1.24 (Andre Masella)
PR #8411: update version support table for 0.56.1 (esc)
PR #8412: Create changelog for 0.56.1 (Andre Masella)
PR #8413: Fix Azure CI for NumPy 1.23 and use conda-forge scipy (Siu Kwan Lam)
PR #8414: Hotfix for 0.56.2 (Siu Kwan Lam)
Authors:
Andre Masella
esc
Graham Markall
jamesobutler
Siu Kwan Lam
stuartarchibald
Version 0.56.1 (NO RELEASE)
The release was skipped due to issues during the release process.
Version 0.56.0 (25 July, 2022)
This release continues to add new features, bug fixes and stability improvements to Numba. Please note that this will be the last release that has support for Python 3.7 as the next release series (Numba 0.57) will support Python 3.11! Also note that, this will be the last release to support linux-32 packages produced by the Numba team.
Python language support enhancements:
Previously missing support for large, in-line dictionaries and internal calls to functions with large numbers of keyword arguments in Python 3.10 has been added.
operator.mul now works for list s.
Literal slices, e.g. slice(1, 10, 2) can be returned from nopython mode functions.
The len function now works on dict_keys, dict_values and dict_items .
Numba’s set implementation now supports reference counted items e.g. strings.
Numba specific feature enhancements:
The experimental jitclass feature gains support for a large number of builtin methods e.g. declaring __hash__ or __getitem__ for a jitclass type.
It’s now possible to use @vectorize on an already @jit family decorated function.
Name mangling has been updated to emit compiled function names that exactly match the function name in Python. This means debuggers, like GDB, can be set to break directly on Python function names.
A GDB “pretty printing” support module has been added, when loaded into GDB Numba’s internal representations of Python/NumPy types are rendered inside GDB as they would be in Python.
An experimental option is added to the @jit family decorators to entirely turn off LLVM’s optimisation passes for a given function (see _dbg_optnone kwarg in the @jit decorator family).
A new environment variable is added NUMBA_EXTEND_VARIABLE_LIFETIMES, which if set will extend the lifetime of variables to the end of their basic block, this to permit a debugging experience in GDB similar to that found in compiled C/C++/Fortran code.
NumPy features/enhancements:
Initial support for passing, using and returning numpy.random.Generator instances has been added, this currently includes support for the random distribution.
The broadcasting functions np.broadcast_shapes and np.broadcast_arrays are now supported.
The min and max functions now work with np.timedelta64 and np.datetime64 types.
Sorting multi-dimensional arrays along the last axis is now supported in np.sort().
The np.clip function is updated to accept NumPy arrays for the a_min and a_max arguments.
The NumPy allocation routines (np.empty , np.ones etc.) support shape arguments specified using members of enum.IntEnum s.
The function np.random.noncentral_chisquare is now supported.
The performance of functions np.full and np.ones has been improved.
Parallel Accelerator enhancements:
The parallel=True functionality is enhanced through the addition of the functions numba.set_parallel_chunksize and numba.get_parallel_chunksize to permit a more fine grained scheduling of work defined in a parallel region. There is also support for adjusting the chunksize via a context manager.
The ID of a thread is now defined to be predictable and within a known range, it is available through calling the function numba.get_thread_id.
The performance of @stencil s has been improved in both serial and parallel execution.
CUDA enhancements:
New functionality:
Self-recursive device functions.
Vector type support (float4, int2, etc.).
Shared / local arrays of extension types can now be created.
Support for linking CUDA C / C++ device functions into Python kernels.
PTX generation for Compute Capabilities 8.6 and 8.7 - e.g. RTX A series, GTX 3000 series.
Comparison operations for float16 types.
Performance improvements:
Context queries are no longer made during launch configuration.
Launch configurations are now LRU cached.
On-disk caching of CUDA kernels is now supported.
Documentation: many new examples added.
Docs:
Numba now has an official “mission statement”.
There’s now a “version support table” in the documentation to act as an easy to use, single reference point, for looking up information about Numba releases and their required/supported dependencies.
General Enhancements:
Numba imports more quickly in environments with large numbers of packages as it now uses importlib-metadata for querying other packages.
Emission of chrome tracing output is now supported for the internal compilation event handling system.
This release is tested and known to work when using the Pyston Python interpreter.
Pull-Requests:
PR #5209: Use importlib to load numba extensions (Stepan Rakitin Graham Markall stuartarchibald)
PR #5877: Jitclass builtin methods (Ethan Pronovost Graham Markall)
PR #6490: Stencil output allocated with np.empty now and new code to initialize the borders. (Todd A. Anderson)
PR #7005: Make numpy.searchsorted match NumPy when first argument is unsorted (Brandon T. Willard)
PR #7363: Update cuda.local.array to clarify “simple constant expression” (e.g. no NumPy ints) (Sterling Baird)
PR #7364: Removes an instance of signed integer overflow undefined behaviour. (Tobias Sargeant)
PR #7537: Add chrome tracing (Hadia Ahmed Siu Kwan Lam)
PR #7556: Testhound/fp16 comparison (Michael Collison Graham Markall)
PR #7586: Support for len on dict.keys, dict.values, and dict.items (Nick Riasanovsky)
PR #7617: Numba gdb-python extension for printing (stuartarchibald)
PR #7619: CUDA: Fix linking with PTX when compiling lazily (Graham Markall)
PR #7621: Add support for linking CUDA C / C++ with @cuda.jit kernels (Graham Markall)
PR #7625: Combined parfor chunking and caching PRs. (stuartarchibald Todd A. Anderson Siu Kwan Lam)
PR #7651: DOC: pypi and conda-forge badges (Ray Bell)
PR #7660: Add support for np.broadcast_arrays (Guilherme Leobas)
PR #7664: Flatten mangling dicts into a single dict (Graham Markall)
PR #7680: CUDA Docs: include example calling slow matmul (Graham Markall)
PR #7682: performance improvements to np.full and np.ones (Rishi Kulkarni)
PR #7684: DOC: remove incorrect warning in np.random reference (Rishi Kulkarni)
PR #7685: Don’t convert setitems that have dimension mismatches to parfors. (Todd A. Anderson)
PR #7690: Implemented np.random.noncentral_chisquare for all size arguments (Rishi Kulkarni)
PR #7695: IntEnumMember support for np.empty, np.zeros, and np.ones (Benjamin Graham)
PR #7699: CUDA: Provide helpful error if the return type is missing for declare_device (Graham Markall)
PR #7700: Support for scalar arguments in Np.ascontiguousarray (Dhruv Patel)
PR #7703: Ignore unsupported types in ShapeEquivSet._getnames() (Benjamin Graham)
PR #7704: Move the type annotation pass to post legalization. (stuartarchibald)
PR #7709: CUDA: Fixes missing type annotation pass following #7704 (stuartarchibald)
PR #7712: Fixing issue 7693 (stuartarchibald Graham Markall luk-f-a)
PR #7714: Support for boxing SliceLiteral type (Nick Riasanovsky)
PR #7718: Bump llvmlite dependency to 0.39.0dev0 for Numba 0.56.0dev0 (stuartarchibald)
PR #7724: Update URLs in error messages to refer to RTD docs. (stuartarchibald)
PR #7728: Document that AOT-compiled functions do not check arg types (Graham Markall)
PR #7729: Handle Omitted/OmittedArgDataModel in DI generation. (stuartarchibald)
PR #7732: update release checklist following 0.55.0 RC1 (esc)
PR #7736: Update CHANGE_LOG for 0.55.0 final. (stuartarchibald)
PR #7740: CUDA Python 11.6 support (Graham Markall)
PR #7744: Fix issues with locating/parsing source during DebugInfo emission. (stuartarchibald)
PR #7745: Fix the release year for Numba 0.55 change log entry. (stuartarchibald)
PR #7748: Fix #7713: Ensure _prng_random_hash return has correct bitwidth (Graham Markall)
PR #7749: Refactor threading layer priority tests to not use stdout/stderr (stuartarchibald)
PR #7752: Fix #7751: Use original filename for array exprs (Graham Markall)
PR #7755: CUDA: Deprecate support for CC < 5.3 and CTK < 10.2 (Graham Markall)
PR #7763: Update Read the Docs configuration (automatic) (readthedocs-assistant)
PR #7764: Add dbg_optnone and dbg_extend_lifetimes flags (Siu Kwan Lam)
PR #7771: Move function unique ID to abi-tags (stuartarchibald Siu Kwan Lam)
PR #7772: CUDA: Add Support to Creating StructModel Array (Michael Wang)
PR #7776: Updates coverage.py config (stuartarchibald)
PR #7777: Remove reference existing issue from GH template. (stuartarchibald)
PR #7778: Remove long deprecated flags from the CLI. (stuartarchibald)
PR #7780: Fix sets with reference counted items (Benjamin Graham)
PR #7782: adding reminder to check on deprecations (esc)
PR #7783: remove upper limit on Python version (esc)
PR #7786: Remove dependency on intel-openmp for OSX (stuartarchibald)
PR #7788: Avoid issue with DI gen for arrayexprs. (stuartarchibald)
PR #7796: update change-log for 0.55.1 (esc)
PR #7797: prune README (esc)
PR #7799: update the release checklist post 0.55.1 (esc)
PR #7801: add sdist command and umask reminder (esc)
PR #7804: update local references from master -> main (esc)
PR #7805: Enhance source line finding logic for debuginfo (Siu Kwan Lam)
PR #7809: Updates the gdb configuration to accept a binary name or a path. (stuartarchibald)
PR #7813: Extend parfors test timeout for aarch64. (stuartarchibald)
PR #7814: CUDA Dispatcher refactor (Graham Markall)
PR #7815: CUDA Dispatcher refactor 2: inherit from dispatcher.Dispatcher (Graham Markall)
PR #7817: Update intersphinx URLs for NumPy and llvmlite. (stuartarchibald)
PR #7823: Add renamed vars to callee scope such that it is self consistent. (stuartarchibald)
PR #7829: CUDA: Support Enum/IntEnum in Kernel (Michael Wang)
PR #7833: Add version support information table to docs. (stuartarchibald)
PR #7835: Fix pickling error when module cannot be imported (idorrington)
PR #7836: min() and max() support for np.datetime and np.timedelta (Benjamin Graham)
PR #7837: Initial refactoring of parfor reduction lowering (Siu Kwan Lam)
PR #7845: change time.time() to time.perf_counter() in docs (Nopileos2)
PR #7846: Fix CUDA enum vectorize test on Windows (Graham Markall)
PR #7848: Support for int * list (Nick Riasanovsky)
PR #7850: CUDA: Pass fastmath compiler flag down to compile_ptx and compile_device; Improve fastmath tests (Michael Wang)
PR #7855: Ensure np.argmin/no.argmax return type is intp (stuartarchibald)
PR #7858: CUDA: Deprecate ptx Attribute and Update Tests (Graham Markall Michael Wang)
PR #7861: Fix a spelling mistake in README (Zizheng Guo)
PR #7864: Fix cross_iter_dep check. (Todd A. Anderson)
PR #7865: Remove add_user_function (Graham Markall)
PR #7866: Support for large numbers of args/kws with Python 3.10 (Nick Riasanovsky)
PR #7878: CUDA: Remove some deprecated support, add CC 8.6 and 8.7 (Graham Markall)
PR #7893: Use uuid.uuid4() as the key in serialization. (stuartarchibald)
PR #7895: Remove use of llvmlite.llvmpy (Andre Masella)
PR #7898: Skip test_ptds under cuda-memcheck (Graham Markall)
PR #7901: Pyston compatibility for the test suite (Kevin Modzelewski)
PR #7904: Support m1 (esc)
PR #7911: added sys import (Nightfurex)
PR #7915: CUDA: Fix test checking debug info rendering. (stuartarchibald)
PR #7918: Add JIT examples to CUDA docs (brandon-b-miller Graham Markall)
PR #7919: Disallow //= reductions in pranges. (Todd A. Anderson)
PR #7924: Retain non-modified index tuple components. (Todd A. Anderson)
PR #7939: Fix rendering in feature request template. (stuartarchibald)
PR #7940: Implemented np.allclose in numba/np/arraymath.py (Gagandeep Singh)
PR #7941: Remove debug dump output from closure inlining pass. (stuartarchibald)
PR #7946: instructions for creating a build environment were outdated (esc)
PR #7949: Add Cuda Vector Types (Michael Wang)
PR #7950: mission statement (esc)
PR #7956: Stop using pip for 3.10 on public ci (Revert “start testing Python 3.10 on public CI”) (esc)
PR #7957: Use cloudpickle for disk caches (Siu Kwan Lam)
PR #7958: numpy.clip accept numpy.array for a_min, a_max (Gagandeep Singh)
PR #7959: Permit a new array model to have a super set of array model fields. (stuartarchibald)
PR #7961: numba.typed.typeddict.Dict.get uses castedkey to avoid returning default value even if the key is present (Gagandeep Singh)
PR #7963: remove the roadmap from the sphinx based docs (esc)
PR #7964: Support for large constant dictionaries in Python 3.10 (Nick Riasanovsky)
PR #7965: Use uuid4 instead of PID in cache temp name to prevent collisions. (stuartarchibald)
PR #7971: lru cache for configure call (Tingkai Liu)
PR #7972: Fix fp16 support for cuda shared array (Michael Collison Graham Markall)
PR #7986: Small caching refactor to support target cache implementations (Graham Markall)
PR #7994: Supporting multidimensional arrays in quick sort (Gagandeep Singh Siu Kwan Lam)
PR #7996: Fix binding logic in @overload_glue. (stuartarchibald)
PR #7999: Remove @overload_glue for NumPy allocators. (stuartarchibald)
PR #8003: Add np.broadcast_shapes (Guilherme Leobas)
PR #8004: CUDA fixes for Windows (Graham Markall)
PR #8014: Fix support for {real,imag} array attrs in Parfors. (stuartarchibald)
PR #8016: [Docs] [Very Minor] Make numba.jit boundscheck doc line consistent (Kyle Martin)
PR #8017: Update FAQ to include details about using debug-only option (Guilherme Leobas)
PR #8027: Support for NumPy 1.22 (stuartarchibald)
PR #8031: Support for Numpy BitGenerators PR#1 - Core Generator Support (Kaustubh)
PR #8035: Fix a couple of typos RE implementation (stuartarchibald)
PR #8037: CUDA self-recursion tests (Graham Markall)
PR #8044: Make Python 3.10 kwarg peephole less restrictive (Nick Riasanovsky)
PR #8046: Fix caching test failures (Siu Kwan Lam)
PR #8049: support str(bool) syntax (LI Da)
PR #8052: Ensure pthread is linked in when building for ppc64le. (Siu Kwan Lam)
PR #8056: Move caching tests from test_dispatcher to test_caching (Graham Markall)
PR #8057: Fix coverage checking (Graham Markall)
PR #8064: Rename “nb:run_pass” to “numba:run_pass” and document it. (Siu Kwan Lam)
PR #8065: Fix PyLowering mishandling starargs (Siu Kwan Lam)
PR #8068: update changelog for 0.55.2 (esc)
PR #8077: change return type of np.broadcast_shapes to a tuple (Guilherme Leobas)
PR #8080: Fix windows test failure due to timeout when the machine is slow poss… (Siu Kwan Lam)
PR #8081: Fix erroneous array count in parallel gufunc kernel generation. (stuartarchibald)
PR #8089: Support on-disk caching in the CUDA target (Graham Markall)
PR #8097: Exclude libopenblas 0.3.20 on osx-arm64 (esc)
PR #8099: Fix Py_DECREF use in case of error state (for devicearray). (stuartarchibald)
PR #8102: Combine numpy run_constrained in meta.yaml to the run requirements (Siu Kwan Lam)
PR #8109: Pin TBB support with respect to incompatible 2021.6 API. (stuartarchibald)
PR #8118: Update release checklists post 0.55.2 (esc)
PR #8123: Fix CUDA print tests on Windows (Graham Markall)
PR #8124: Add explicit checks to all allocators in the NRT. (stuartarchibald)
PR #8126: Mark gufuncs as having mutable outputs (Andre Masella)
PR #8133: Fix #8132. Regression in Record.make_c_struct for handling nestedarray (Siu Kwan Lam)
PR #8137: CUDA: Fix #7806, Division by zero stops the kernel (Graham Markall)
PR #8142: CUDA: Fix some missed changes from dropping 9.2 (Graham Markall)
PR #8144: Fix NumPy capitalisation in docs. (stuartarchibald)
PR #8145: Allow ufunc builder to use previously JITed function (Andre Masella)
PR #8151: pin NumPy to build 0 of 1.19.2 on public CI (esc)
PR #8163: CUDA: Remove context query in launch config (Graham Markall)
PR #8165: Restrict strace based tests to be linux only via support feature. (stuartarchibald)
PR #8170: CUDA: Fix missing space in low occupancy warning (Graham Markall)
PR #8175: make build and upload order consistent (esc)
PR #8181: Fix various typos (luzpaz)
PR #8187: Update CHANGE_LOG for 0.55.2 (stuartarchibald esc)
PR #8189: updated version support information for 0.55.2/0.57 (esc)
PR #8191: CUDA: Update deprecation notes for 0.56. (Graham Markall)
PR #8192: Update CHANGE_LOG for 0.56.0 (stuartarchibald esc Siu Kwan Lam)
PR #8195: Make the workqueue threading backend once again fork safe. (stuartarchibald)
PR #8196: Fix numerical tolerance in parfors caching test. (stuartarchibald)
PR #8197: Fix isinstance warning check test. (stuartarchibald)
PR #8203: pin llvmlite 0.39 for public CI builds (esc)
PR #8255: CUDA: Make numba.cuda.tests.doc_examples.ffi a module to fix #8252 (Graham Markall)
PR #8274: Update version support table doc for 0.56. (stuartarchibald)
PR #8275: Update CHANGE_LOG for 0.56.0 final (stuartarchibald)
Authors:
Andre Masella
Benjamin Graham
brandon-b-miller
Brandon T. Willard
Gagandeep Singh
Dhruv Patel
LI Da
Todd A. Anderson
Ethan Pronovost
esc
Tobias Sargeant
Graham Markall
Guilherme Leobas
Zizheng Guo
Hadia Ahmed
idorrington
Michael Wang
Kaustubh
Kevin Modzelewski
luk-f-a
luzpaz
Kyle Martin
Nightfurex
Nick Riasanovsky
Nopileos2
Ray Bell
readthedocs-assistant
Rishi Kulkarni
Sterling Baird
Siu Kwan Lam
stuartarchibald
Stepan Rakitin
Michael Collison
Tingkai Liu
MAIN commitmail json YAML
doc: Updated devel/py-llvmlite to 0.41.1
MAIN commitmail json YAML
pkgsrc/devel/py-llvmlite/Makefile@1.25
/
diff
pkgsrc/devel/py-llvmlite/PLIST@1.7 / diff
pkgsrc/devel/py-llvmlite/distinfo@1.22 / diff
pkgsrc/devel/py-llvmlite/files/llvm14-clear-gotoffsetmap.patch@1.1 / diff
pkgsrc/devel/py-llvmlite/files/llvm14-remove-use-of-clonefile.patch@1.1 / diff
pkgsrc/devel/py-llvmlite/files/llvm14-svml.patch@1.1 / diff
pkgsrc/devel/py-llvmlite/patches/patch-ffi_Makefile.freebsd deleted
pkgsrc/devel/py-llvmlite/patches/patch-ffi_Makefile.linux deleted
pkgsrc/devel/py-llvmlite/patches/patch-ffi_targets.cpp deleted
pkgsrc/devel/py-llvmlite/PLIST@1.7 / diff
pkgsrc/devel/py-llvmlite/distinfo@1.22 / diff
pkgsrc/devel/py-llvmlite/files/llvm14-clear-gotoffsetmap.patch@1.1 / diff
pkgsrc/devel/py-llvmlite/files/llvm14-remove-use-of-clonefile.patch@1.1 / diff
pkgsrc/devel/py-llvmlite/files/llvm14-svml.patch@1.1 / diff
pkgsrc/devel/py-llvmlite/patches/patch-ffi_Makefile.freebsd deleted
pkgsrc/devel/py-llvmlite/patches/patch-ffi_Makefile.linux deleted
pkgsrc/devel/py-llvmlite/patches/patch-ffi_targets.cpp deleted
devel/py-llvmlite: un-break at least on Linux, update to 0.41.1 with static LLVM
This now builds a patched LLVM that is statically linked, with llvmlite patches,
as upstream wants and supports as only variant.
This has not been tested widely, but has been uncondtionally BROKEN before.
v0.41.1 (Oct 17, 2023)¶
This is a maintenance release that includes a workaround in the test suite for ORCJit issues on the aarch64 platform. Also, this is the last release to support the Windows 32-bit platform (win32).
Pull-Requests:
PR #996: fix typos found by codespell (esc)
PR #997: Fix issue #880 by ensuring all sources are compiled under FreeBSD. (ke6jjj)
PR #998: adding sphinx_rtd_theme to RTD build to fix build (esc)
PR #1001: Fix / workaround for OrcJIT blocking issues (gmarkall)
Authors:
esc
ke6jjj
gmarkall
v0.41.0 (Sept 20, 2023)¶
Pull-Requests:
PR #871: Refactor native library loading (folded sklam)
PR #896: drop upper limit on Python for conda recipe (esc)
PR #904: Create GitHub Action for llvmlite release (apmasell)
PR #934: Expose TargetLibraryInfo pass (sklam)
PR #935: Disable zlib for LLVM on Windows (apmasell)
PR #936: Enable querying constants and value kinds (tbennun)
PR #939: Bump llvmdev build number to include the nozlib change for windows (sklam)
PR #940: Update CHANGE_LOG for 0.40.0 final. (stuartarchibald)
PR #942: Add ORCJITv2 support (apmasell)
PR #951: Add a type hint for IntType.width (apmasell)
PR #952: Fix CI failing due to unsupported target triple on non-x86 platforms. (sklam)
PR #958: fixup LLVM versions in version compat table (esc)
PR #959: Remove support for LLVM < 14 (apmasell)
PR #960: add various bullets to release checklists and sync (esc)
PR #963: Allow adding comments to generated IR (apmasell)
PR #966: build: support building on GNU/Hurd (pinotree)
PR #967: Expose library name in OrcJIT tracker (apmasell)
PR #968: Update LLVM manual build instructions (apmasell)
PR #969: update changelog on main for v0.40.1 (esc)
PR #983: adding RTD conf file V2 as per request (esc)
PR #985: Update release checklist post 0.41.0rc1 (esc)
PR #988: Fix FreeBsd build (sklam)
Authors:
apmasell
esc
folded
pinotree
sklam
stuartarchibald
tbennun
v0.40.1 (June 21, 2023)¶
Pull-Requests:
PR #945: Fix #944. Add .argtypes to prevent errors in pypy. (Siu Kwan Lam)
PR #947: Update SVML patch for LLVM 14 (Andre Masella)
PR #949: Handle PowerPC synonyms (Andre Masella)
PR #950: Fix incorrect byval and other attributes on LLVM 14 (Andre Masella)
Authors:
Andre Masella
Siu Kwan Lam
v0.40.0 (May 1, 2023)¶
This release predominantly upgrades to LLVM 14 and Python 3.11. Bindings to a large number of passes are added. The minimum supported Python version is now Python 3.8.
Note: A bug was discovered in LLVM’s RuntimeDyldELF on the Aarch64 platform that can cause segfaults when cross module symbols are linked. It is necessary for JIT users to build LLVM with the patch added in PR#926.
Pull-Requests:
PR #827: Add more LLVM pass bindings (apmasell)
PR #830: Add LLVM 14 support (apmasell)
PR #860: the git tag for the RC needs an rc1 suffix (esc)
PR #869: bump max Python version to 3.11 (esc sklam)
PR #876: Remove llvmlite.llvmpy after deprecation (apmasell)
PR #883: Adds support for calling functions with ‘tail’, ‘notail’, or ‘musttail’ markers. (bslatkin)
PR #886: Simplify setup.py Python version guard (mbargull)
PR #892: Bump minimum supported Python version to 3.8 (jamesobutler)
PR #893: Upgrade to ubuntu-20.04 for azure pipeline CI (jamesobutler)
PR #899: Run Minconda install with bash (gmarkall)
PR #903: Fix flake8 config and style for flake8 6 (gmarkall)
PR #905: Add YouCompleteMe configuration file and ignore vim swap files (gmarkall)
PR #906: Replace importlib-resources legacy API use (sklam)
PR #910: Aarch64 split build for LLVM14 (sklam)
PR #921: Setup AzureCI to use py311 and llvm14 (sklam)
PR #922: Fix AzureCI not using llvm14 on windows (sklam)
PR #926: llvmdev recipe: Add patch that clears GOTOffsetMap (apmasell gmarkall sklam)
PR #930: Update changelog for 0.40.0rc1 (sklam stuartarchibald)
PR #931: Remove maximum Python version limit (sklam apmasell)
PR #932: Fix wheel builds (sklam)
PR #935: Disable zlib for LLVM on Windows (apmasell)
PR #939: Bump llvmdev build number to include the nozlib change for windows (sklam)
PR #940: Update CHANGE_LOG for 0.40.0 final. (stuartarchibald)
Authors:
apmasell
bslatkin
esc
gmarkall
jamesobutler
mbargull
sklam
stuartarchibald
v0.39.1 (September 1, 2022)¶
This is a maintenance release to fix build issues on MacOS.
Pull-Requests:
PR #752: Skip test if libm is not found (Siu Kwan Lam)
PR #865: Move Azure to use macos-11 (stuartarchibald)
PR #874: Add zlib as a dependency for aarch64 (esc)
PR #878: Update changelog (Andre Masella)
v0.39.0 (July 25, 2022)¶
This release predominantly adds new features and improves functionality.
It’s now possible to directly set LLVM metadata on global variables.
Functions and global variables now support the specification of a section in which they should be placed.
The attribute source_file had been added to the ModuleRef class, it returns the module’s original file name.
The FFI library binding to LLVM is now loaded with importlib to increase compatibility with other projects and improve start-up times.
Linux builds now use the parallel option to make to speed up building the FFI library.
Preliminary work to expose LLVM’s optimization-remarks interface has been undertaken. The bindings are exposed and tested, but not yet documented for general use (additional work is needed).
Deprecations:
The llvmlite.llvmpy module has been deprecated as the functionality it provides is available through the llvmlite.ir module. See the deprecation guide in the user documentation for details and recommendations regarding replacement.
Pull-Requests:
PR #328: Build C files separately on Linux and support parallel make (Michał Górny)
PR #754: manylinux2014 aarch64 wheels with system compilers (esc)
PR #760: add support for attaching metadata to global variables (Graham Markall John Törnblom)
PR #786: Update Windows and OSX CI images. (stuartarchibald)
PR #801: Update ffi.py (franzhaas)
PR #803: llvm::Module::GetSourceFileName (J. Aaron Pendergrass)
PR #806: Bump to v0.39.0dev (esc)
PR #807: Exclude ExecutionEngine tests on linux 32 (esc)
PR #809: Update CHANGE_LOG for 0.38.0 (stuartarchibald)
PR #813: Add m1 support to conda build scripts (esc Stan Seibert)
PR #815: update local references (esc)
PR #816: remove configuration landscape service as it is no longer used (esc)
PR #817: remove uppper limit on Python requires (esc)
PR #819: adding rc and final release checklist templates (esc)
PR #823: Add section to globals (Andreas Wrisley)
PR #824: add GitHub URL for PyPi (Andrii Oriekhov)
PR #825: Add flag handling to more instructions. (stuartarchibald Andre Masella)
PR #826: Deprecated llvmlite.llvmpy (Andre Masella)
PR #831: Format C++ code (Andre Masella)
PR #832: DOC: Fix the syntax for the llvmlite discourse topic link. (stuartarchibald)
PR #835: Add pre-commit hooks for clang-format (Andre Masella)
PR #837: Add support for optimization remarks in pass managers (Siu Kwan Lam Andre Masella)
PR #846: Cherry-Pick: #842 –> main :Changelog for 0.38.1 (esc)
PR #851: adding the llvm_11_consecutive_registers.patch (esc)
PR #857: Delegate passmanager remarks methods (Andre Masella)
PR #858: Update CHANGE_LOG for 0.39.0 (esc Graham Markall stuartarchibald)
PR #863: Update changelog for 0.39.0 release (Siu Kwan Lam)
PR #864: Update release date for 0.39.0 release. (stuartarchibald)
PR #867: Update CHANGE_LOG 0.39.0 final. (stuartarchibald)
Authors:
Andrii Oriekhov
Andreas Wrisley
Andre Masella
esc
franzhaas
Graham Markall
J. Aaron Pendergrass
John Törnblom
Michał Górny
Stan Seibert
Siu Kwan Lam
stuartarchibald
This now builds a patched LLVM that is statically linked, with llvmlite patches,
as upstream wants and supports as only variant.
This has not been tested widely, but has been uncondtionally BROKEN before.
v0.41.1 (Oct 17, 2023)¶
This is a maintenance release that includes a workaround in the test suite for ORCJit issues on the aarch64 platform. Also, this is the last release to support the Windows 32-bit platform (win32).
Pull-Requests:
PR #996: fix typos found by codespell (esc)
PR #997: Fix issue #880 by ensuring all sources are compiled under FreeBSD. (ke6jjj)
PR #998: adding sphinx_rtd_theme to RTD build to fix build (esc)
PR #1001: Fix / workaround for OrcJIT blocking issues (gmarkall)
Authors:
esc
ke6jjj
gmarkall
v0.41.0 (Sept 20, 2023)¶
Pull-Requests:
PR #871: Refactor native library loading (folded sklam)
PR #896: drop upper limit on Python for conda recipe (esc)
PR #904: Create GitHub Action for llvmlite release (apmasell)
PR #934: Expose TargetLibraryInfo pass (sklam)
PR #935: Disable zlib for LLVM on Windows (apmasell)
PR #936: Enable querying constants and value kinds (tbennun)
PR #939: Bump llvmdev build number to include the nozlib change for windows (sklam)
PR #940: Update CHANGE_LOG for 0.40.0 final. (stuartarchibald)
PR #942: Add ORCJITv2 support (apmasell)
PR #951: Add a type hint for IntType.width (apmasell)
PR #952: Fix CI failing due to unsupported target triple on non-x86 platforms. (sklam)
PR #958: fixup LLVM versions in version compat table (esc)
PR #959: Remove support for LLVM < 14 (apmasell)
PR #960: add various bullets to release checklists and sync (esc)
PR #963: Allow adding comments to generated IR (apmasell)
PR #966: build: support building on GNU/Hurd (pinotree)
PR #967: Expose library name in OrcJIT tracker (apmasell)
PR #968: Update LLVM manual build instructions (apmasell)
PR #969: update changelog on main for v0.40.1 (esc)
PR #983: adding RTD conf file V2 as per request (esc)
PR #985: Update release checklist post 0.41.0rc1 (esc)
PR #988: Fix FreeBsd build (sklam)
Authors:
apmasell
esc
folded
pinotree
sklam
stuartarchibald
tbennun
v0.40.1 (June 21, 2023)¶
Pull-Requests:
PR #945: Fix #944. Add .argtypes to prevent errors in pypy. (Siu Kwan Lam)
PR #947: Update SVML patch for LLVM 14 (Andre Masella)
PR #949: Handle PowerPC synonyms (Andre Masella)
PR #950: Fix incorrect byval and other attributes on LLVM 14 (Andre Masella)
Authors:
Andre Masella
Siu Kwan Lam
v0.40.0 (May 1, 2023)¶
This release predominantly upgrades to LLVM 14 and Python 3.11. Bindings to a large number of passes are added. The minimum supported Python version is now Python 3.8.
Note: A bug was discovered in LLVM’s RuntimeDyldELF on the Aarch64 platform that can cause segfaults when cross module symbols are linked. It is necessary for JIT users to build LLVM with the patch added in PR#926.
Pull-Requests:
PR #827: Add more LLVM pass bindings (apmasell)
PR #830: Add LLVM 14 support (apmasell)
PR #860: the git tag for the RC needs an rc1 suffix (esc)
PR #869: bump max Python version to 3.11 (esc sklam)
PR #876: Remove llvmlite.llvmpy after deprecation (apmasell)
PR #883: Adds support for calling functions with ‘tail’, ‘notail’, or ‘musttail’ markers. (bslatkin)
PR #886: Simplify setup.py Python version guard (mbargull)
PR #892: Bump minimum supported Python version to 3.8 (jamesobutler)
PR #893: Upgrade to ubuntu-20.04 for azure pipeline CI (jamesobutler)
PR #899: Run Minconda install with bash (gmarkall)
PR #903: Fix flake8 config and style for flake8 6 (gmarkall)
PR #905: Add YouCompleteMe configuration file and ignore vim swap files (gmarkall)
PR #906: Replace importlib-resources legacy API use (sklam)
PR #910: Aarch64 split build for LLVM14 (sklam)
PR #921: Setup AzureCI to use py311 and llvm14 (sklam)
PR #922: Fix AzureCI not using llvm14 on windows (sklam)
PR #926: llvmdev recipe: Add patch that clears GOTOffsetMap (apmasell gmarkall sklam)
PR #930: Update changelog for 0.40.0rc1 (sklam stuartarchibald)
PR #931: Remove maximum Python version limit (sklam apmasell)
PR #932: Fix wheel builds (sklam)
PR #935: Disable zlib for LLVM on Windows (apmasell)
PR #939: Bump llvmdev build number to include the nozlib change for windows (sklam)
PR #940: Update CHANGE_LOG for 0.40.0 final. (stuartarchibald)
Authors:
apmasell
bslatkin
esc
gmarkall
jamesobutler
mbargull
sklam
stuartarchibald
v0.39.1 (September 1, 2022)¶
This is a maintenance release to fix build issues on MacOS.
Pull-Requests:
PR #752: Skip test if libm is not found (Siu Kwan Lam)
PR #865: Move Azure to use macos-11 (stuartarchibald)
PR #874: Add zlib as a dependency for aarch64 (esc)
PR #878: Update changelog (Andre Masella)
v0.39.0 (July 25, 2022)¶
This release predominantly adds new features and improves functionality.
It’s now possible to directly set LLVM metadata on global variables.
Functions and global variables now support the specification of a section in which they should be placed.
The attribute source_file had been added to the ModuleRef class, it returns the module’s original file name.
The FFI library binding to LLVM is now loaded with importlib to increase compatibility with other projects and improve start-up times.
Linux builds now use the parallel option to make to speed up building the FFI library.
Preliminary work to expose LLVM’s optimization-remarks interface has been undertaken. The bindings are exposed and tested, but not yet documented for general use (additional work is needed).
Deprecations:
The llvmlite.llvmpy module has been deprecated as the functionality it provides is available through the llvmlite.ir module. See the deprecation guide in the user documentation for details and recommendations regarding replacement.
Pull-Requests:
PR #328: Build C files separately on Linux and support parallel make (Michał Górny)
PR #754: manylinux2014 aarch64 wheels with system compilers (esc)
PR #760: add support for attaching metadata to global variables (Graham Markall John Törnblom)
PR #786: Update Windows and OSX CI images. (stuartarchibald)
PR #801: Update ffi.py (franzhaas)
PR #803: llvm::Module::GetSourceFileName (J. Aaron Pendergrass)
PR #806: Bump to v0.39.0dev (esc)
PR #807: Exclude ExecutionEngine tests on linux 32 (esc)
PR #809: Update CHANGE_LOG for 0.38.0 (stuartarchibald)
PR #813: Add m1 support to conda build scripts (esc Stan Seibert)
PR #815: update local references (esc)
PR #816: remove configuration landscape service as it is no longer used (esc)
PR #817: remove uppper limit on Python requires (esc)
PR #819: adding rc and final release checklist templates (esc)
PR #823: Add section to globals (Andreas Wrisley)
PR #824: add GitHub URL for PyPi (Andrii Oriekhov)
PR #825: Add flag handling to more instructions. (stuartarchibald Andre Masella)
PR #826: Deprecated llvmlite.llvmpy (Andre Masella)
PR #831: Format C++ code (Andre Masella)
PR #832: DOC: Fix the syntax for the llvmlite discourse topic link. (stuartarchibald)
PR #835: Add pre-commit hooks for clang-format (Andre Masella)
PR #837: Add support for optimization remarks in pass managers (Siu Kwan Lam Andre Masella)
PR #846: Cherry-Pick: #842 –> main :Changelog for 0.38.1 (esc)
PR #851: adding the llvm_11_consecutive_registers.patch (esc)
PR #857: Delegate passmanager remarks methods (Andre Masella)
PR #858: Update CHANGE_LOG for 0.39.0 (esc Graham Markall stuartarchibald)
PR #863: Update changelog for 0.39.0 release (Siu Kwan Lam)
PR #864: Update release date for 0.39.0 release. (stuartarchibald)
PR #867: Update CHANGE_LOG 0.39.0 final. (stuartarchibald)
Authors:
Andrii Oriekhov
Andreas Wrisley
Andre Masella
esc
franzhaas
Graham Markall
J. Aaron Pendergrass
John Törnblom
Michał Górny
Stan Seibert
Siu Kwan Lam
stuartarchibald
MAIN commitmail json YAML
math/arpack-ng: use pkg-config as tool
This fixes the build where there is no pkg-config in the base system
hiding the fact that we did not pull it in explicitly.
This fixes the build where there is no pkg-config in the base system
hiding the fact that we did not pull it in explicitly.
MAIN commitmail json YAML
libpll: Do not convert man page to PDF
This depends on locating ps2pdf and doesn't seem that useful. If you
want the man page, any man page, as PDF, you can run man -t | ps2pdf
yourself.
This depends on locating ps2pdf and doesn't seem that useful. If you
want the man page, any man page, as PDF, you can run man -t | ps2pdf
yourself.
MAIN commitmail json YAML
doc: Updated math/cblas64 to 3.12.0
MAIN commitmail json YAML
doc: Updated math/cblas to 3.12.0
MAIN commitmail json YAML
doc: Updated math/blas64 to 3.12.0
MAIN commitmail json YAML
doc: Updated math/blas to 3.12.0
MAIN commitmail json YAML
doc: Updated math/lapacke64 to 3.12.0
MAIN commitmail json YAML
doc: Updated math/lapacke to 3.12.0
MAIN commitmail json YAML
doc: Updated math/lapack64 to 3.12.0
MAIN commitmail json YAML
doc: Updated math/lapack to 3.12.0
MAIN commitmail json YAML
pkgsrc/math/blas/PLIST@1.7
/
diff
pkgsrc/math/blas64/PLIST@1.2 / diff
pkgsrc/math/cblas/Makefile@1.5 / diff
pkgsrc/math/cblas/PLIST@1.5 / diff
pkgsrc/math/cblas64/Makefile@1.2 / diff
pkgsrc/math/lapack/Makefile@1.46 / diff
pkgsrc/math/lapack/Makefile.common@1.19 / diff
pkgsrc/math/lapack/PLIST@1.7 / diff
pkgsrc/math/lapack/distinfo@1.35 / diff
pkgsrc/math/lapack/patches/patch-BLAS_SRC_CMakeLists.txt deleted
pkgsrc/math/lapack/patches/patch-CBLAS_CMakeLists.txt deleted
pkgsrc/math/lapack/patches/patch-CBLAS_cblas.pc.in deleted
pkgsrc/math/lapack/patches/patch-CBLAS_src_CMakeLists.txt deleted
pkgsrc/math/lapack/patches/patch-CMakeLists.txt deleted
pkgsrc/math/lapack/patches/patch-LAPACKE_CMakeLists.txt deleted
pkgsrc/math/lapack/patches/patch-LAPACKE_lapacke.pc.in deleted
pkgsrc/math/lapack/patches/patch-SRC_CMakeLists.txt deleted
pkgsrc/math/lapack/patches/patch-TESTING_MATGEN_CMakeLists.txt deleted
pkgsrc/math/lapack/patches/patch-buildsystem-upstreamed@1.1 / diff
pkgsrc/math/lapack/version.mk@1.6 / diff
:
(more 6 files)
pkgsrc/math/blas64/PLIST@1.2 / diff
pkgsrc/math/cblas/Makefile@1.5 / diff
pkgsrc/math/cblas/PLIST@1.5 / diff
pkgsrc/math/cblas64/Makefile@1.2 / diff
pkgsrc/math/lapack/Makefile@1.46 / diff
pkgsrc/math/lapack/Makefile.common@1.19 / diff
pkgsrc/math/lapack/PLIST@1.7 / diff
pkgsrc/math/lapack/distinfo@1.35 / diff
pkgsrc/math/lapack/patches/patch-BLAS_SRC_CMakeLists.txt deleted
pkgsrc/math/lapack/patches/patch-CBLAS_CMakeLists.txt deleted
pkgsrc/math/lapack/patches/patch-CBLAS_cblas.pc.in deleted
pkgsrc/math/lapack/patches/patch-CBLAS_src_CMakeLists.txt deleted
pkgsrc/math/lapack/patches/patch-CMakeLists.txt deleted
pkgsrc/math/lapack/patches/patch-LAPACKE_CMakeLists.txt deleted
pkgsrc/math/lapack/patches/patch-LAPACKE_lapacke.pc.in deleted
pkgsrc/math/lapack/patches/patch-SRC_CMakeLists.txt deleted
pkgsrc/math/lapack/patches/patch-TESTING_MATGEN_CMakeLists.txt deleted
pkgsrc/math/lapack/patches/patch-buildsystem-upstreamed@1.1 / diff
pkgsrc/math/lapack/version.mk@1.6 / diff
:
(more 6 files)
math/{lapack*,cblas*}: update netlib BLAS to 3.12.0
This drops the static libraries along with the custom patches for those. Also,
the hack of linking CBLAS as Fortran library as opposed to C is gone. If this
breaks some NetBSD install, it should be investigated and fixed properly.
The only patch now is one unified one I already submitted for inclusion
upstream. Maybe soon we can drop any patches. Yay!
Here is a list of upstream changes:
LAPACK 3.12.0: What窶冱 new
Download: lapack-3.12.0.tar.gz
This is a major release and also addressing multiple bug fixes.
Dynamic Mode Decomposition (DMD)
xGEDMD computes the Dynamic Mode Decomposition (DMD) for a pair of
data snapshot matrices. For the input matrices X and Y such that Y =
A*X with an inaccessible matrix A, xGEDMD computes a certain number
of Ritz pairs of A using the standard Rayleigh-Ritz extraction from
a subspace of range(X) that is determined using the leading left
singular vectors of X. Optionally, xGEDMD returns the residuals of
the computed Ritz pairs, the information needed for a refinement of
the Ritz vectors, or the eigenvectors of the Exact DMD.
xGEDMDQ does the same as xGEDMD but uses a QR factorization based
compression of the data.
See: Z. Drmac: A LAPACK implementation of the Dynamic Mode
Decomposition I. Technical report. AIMDyn Inc. and LAPACK Working
Note 298.
Developed and coded by Zlatko Drmac, Faculty of Science, University
of Zagreb. In cooperation with AIMdyn Inc., Santa Barbara, CA. And
supported by (1) DARPA SBIR project "Koopman Operator-Based
Forecasting for Nonstationary Processes from Near-Term, Limited
Observational Data", Contract No: W31P4Q-21-C-0007; (2) DARPA PAI
project "Physics-Informed Machine Learning Methodologies", Contract
No: HR0011-18-9-0033; (3) DARPA MoDyL project "A Data-Driven,
Operator-Theoretic Framework for Space-Time Analysis of Process
Dynamics", Contract No: HR0011-16-C-0116. Any opinions, findings and
conclusions or recommendations expressed in this material are those of
the author and do not necessarily reflect the views of the DARPA SBIR
Program Office. Distribution Statement A: Approved for Public Release,
Distribution Unlimited. Cleared by DARPA on September 29, 2022
Adding Dynamic Mode Decomposition (DMD) into LAPACK by @dbielich in
PR 736
Update C prototypes and LAPACKE interfaces for ?GEDMD/?GEDMDQ by
@martin-frbg in PR 880
Truncated QR with Column Pivoting
The routine computes a truncated (rank K) or full rank Householder
QR factorization with column pivoting of a real M-by-N matrix A
using Level 3 BLAS.
The truncation criteria (i.e. when to stop the factorization) can
be any of the following: (1) The input parameter KMAX, the maximum
number of columns KMAX to factorize; (2) The input parameter ABSTOL,
the absolute tolerance for the maximum column 2-norm of the residual
matrix R22(K); (3) The input parameter RELTOL, the tolerance for the
maximum column 2-norm matrix of the residual matrix R22(K) divided by
the maximum column 2-norm of the original matrix A, which is equal
to abs(R(1,1)). The algorithm stops when any of these conditions is
first satisfied, otherwise the whole matrix A is factorized.
Truncated QR with Column Pivoting by @scr2016 in PR 891
Reciprocal Scaling of complex vectors
[C/Z]RSCL multiplies an n-element complex vector x by the complex
scalar 1/a. This is done without overflow or underflow as long as
the final result x/a does not overflow or underflow.
See: "An algorithm for scaling vectors by the reciprocal
of a complex number", Weslley da Silva Pereira,
[arXiv:2311.05736](https://arxiv.org/abs/2311.05736)
Adds CRSCL by @weslleyspereira in PR 839
Improvements in the 64-bit API
Fix CBLAS tests with 64-bit indexing by @svillemot in PR 767
Add Index-64 API as extended API with _64 suffix for CBLAS by
@mkrainiuk in PR 846
Revert "Add Index-64 API as extended API with _64 suffix for CBLAS"
by @langou in PR 856
Add Index-64 API as extended API with _64 suffix for CBLAS by
@mkrainiuk in PR 867
Create DOCS/CBLAS.md by @mkrainiuk in PR 863
Reduce number of macros in fortran compilation line for BLAS _64
API by @mkrainiuk in PR 861
Bug fixes and other changes
Windows build fix by @ACSimon33 in PR 760
Added option to enable flat namespace on macOS by @ACSimon33 in PR 762
Fix bug in new test case for LAPACK 3.11 SLATRS3 by @dklyuchinskiy
in PR 755
Check for NaNs in *GECON by @weslleyspereira in PR 765
Fixed bug in array bounds in complex syl01 test by @dklyuchinskiyin
PR 758
Fix uninitialized M when quick return in DLARRD and SLARRD by
@akobotov in PR 769
In LAPACKE tgsen, allocate iwork when ijob = 0. Fixes #772. by
@mgates3 in PR 773
Fix SLATRS3 and CLATRS3 tests by @bartoldeman in PR 764
Fix uninitialized out variables in LARR functions by @echeresh in
PR 775
Warnings supression in some LAPACKE functions by @jgpallero in PR 780
Revert "Warnings supression in some LAPACKE functions" by @langou
in PR 781
Warnings supression and deletion of unnecessary check in some LAPACKE
xLARFB functions by @jgpallero in PR 782
remove redundant space from xerbla call sbgv/hbgv by @dklyuchinskiy
in PR 792
don窶冲 subtract N_DEFLATED from istop twice by @thijssteel in PR 794
fix rfp test for DIAG = U by @dklyuchinskiy in PR 796
fix bug in complex precision tests (c|z)het21 by @EduardFedorenkov
in PR 798
CMake: Disable TEST_FORTRAN_COMPILER by @jschueller in PR 761
Fix typos in documentation by @angsch in PR 750
Add minimum permissions to workflows by @gabibguti in PR 804
Add numerical tests for trevc3 by @angsch in PR 682
Remove legacy function LABAD by @angsch in PR 805
Refactor xGEBAL by @eprovst in PR 808
Fix typos and errors in comments by @jip in PR 809
cmake: allow setting a prefix for the library names by @joseeroman
in PR 810
Fix typos in comments by @jip in PR 811
fix #813 by @langou in PR 814
Replace the (partially defined) constant index variable INDIBL in
?SBGVX and related by @martin-frbg in PR 807
CTGEVC, ZTGEVC: fix typo in description of VR argument by @svillemot
in PR 812
Add Security Policy by @gabibguti in PR 819
typos by @musvaage in PR 820
extend tests for error exit sysv sytd2 gehd2 by @dklyuchinskiy in
PR 795
CMake: avoid "make" in blas++ and lapack++ by @nim65s in PR 821
appveyor: output test failures by @nim65s in PR 822
Reference actions by commit SHA by @gabibguti in PR 829
LAPACKE interfaces for [cz]unhr_col and [sd]orhr_col by @sknepper
in PR 827
fix segfault problem when executing LAPACKE_*geqrt on row major #766
by @sbite0138 in PR 768
Adds comment related to zero-sized matrix B in GELSY by
@weslleyspereira in PR 833
update brief descriptions of function purpose, Closes #230 by
@weslleyspereira in PR 831
Fix scaling in (S/D)TGSNA, fix #103, thanks to @elivanova by
@weslleyspereira in PR 830
Exits xLARUV when N < 1 by @weslleyspereira in PR 837
Create GitHub action to test CMake build system on Windows by
@weslleyspereira in PR 524
Fix bug in lapacke_[s,d]geesx by @weslleyspereira in PR 836
Removes unused SMIN from bdsqr by @weslleyspereira in PR 832
Use a better (more informative) message when we say the compiler
intr窶ｦ by @weslleyspereira in PR 845
Improve variants of Cholesky and QR by @angsch in PR 847
fixes #848 by @jaganmn in PR 849
Attempt to fix Appveyor on Windows by @angsch in PR 854
fix dlasd0 / slasd0 documentation issue by @mtowara in PR 855
Remove legacy warning for non IEEE 754 compliant machines by @angsch
in PR 852
Add verbose build to CI by @mkrainiuk in PR 858
[cz]hetrd_hb2st.F, [sd]sytrd_sb2st.F OpenMP fixes by @chrwarm in
PR 860
new doxygen group structure by @mgates3 in PR 802
Correct the order of returned eigenvalue and eigenvectors for 2x2
matrices with IL=IU in C/D/S/Z/STEMR by @aravindh-krishnamoorthy in
PR 867
fix nrhs=0 case in ?gelss by @eaberendeev in PR 876
Fix computation of uplo in LAPACKE_xlarfb by @vladimir-ch in PR 878
Fix workspace query corner cases by @angsch in PR 883
Fix actual arguments in some procedure calls by @mjacobse in PR 885
Improve Cholesky variants by @angsch in PR 889
Removes usage of Experimental (interactive) mode in ctest by
@weslleyspereira in PR 892
Updates the documentation of xGEMV and xGBMV related to when M=0
and N=0 by @weslleyspereira in PR 843
Add Scorecard by @gabibguti in PR 895
Remove auxiliary GEQRS, GELQS by @angsch in PR 900
CMake config for IntelLLVM (ifx) and NVIDIA HPC SDK (nvfortran)
by @ACSimon33 in PR 898
Fix build for CMake >= 3.27 by @scivision in PR 910
allow absolute GNU install dirs by @chayleaf in PR 893
dtgex2: add 2 to iwork length to prevent OOB interaction in Dtgsy2
by @soypat in PR 907
Adds OpenSSF Scorecard badge by @weslleyspereira in PR 896
Fix issue #908 related to accumulation in xLASSQ by @weslleyspereira
in PR 909
Apply ROUNDUP_LWORK function in lapack by @kleineLi in PR 904
Compilation of LAPACKE possibly independent from Fortran by
@weslleyspereira in PR 834
Always use C as linker language for CBLAS by @weslleyspereira in
PR 920
Uses Valgrind for ExperimentalMemCheck in ctest by @weslleyspereira
in PR 844
Adding in quotes in cmake for Intel ifx and linux build by @colleeneb
in PR 922
Fix complex BDSQR maxit by @pleshkovvli in PR 927
xORBDB6/xUNBDB6: fix a constant by @christoph-conrads in PR 928
Fixed Fortran preprocessor flag for NAG Fortran compiler by @ACSimon33
in PR 939
Fixed void main() for AppleClang by @ACSimon33 in PR 940
This drops the static libraries along with the custom patches for those. Also,
the hack of linking CBLAS as Fortran library as opposed to C is gone. If this
breaks some NetBSD install, it should be investigated and fixed properly.
The only patch now is one unified one I already submitted for inclusion
upstream. Maybe soon we can drop any patches. Yay!
Here is a list of upstream changes:
LAPACK 3.12.0: What窶冱 new
Download: lapack-3.12.0.tar.gz
This is a major release and also addressing multiple bug fixes.
Dynamic Mode Decomposition (DMD)
xGEDMD computes the Dynamic Mode Decomposition (DMD) for a pair of
data snapshot matrices. For the input matrices X and Y such that Y =
A*X with an inaccessible matrix A, xGEDMD computes a certain number
of Ritz pairs of A using the standard Rayleigh-Ritz extraction from
a subspace of range(X) that is determined using the leading left
singular vectors of X. Optionally, xGEDMD returns the residuals of
the computed Ritz pairs, the information needed for a refinement of
the Ritz vectors, or the eigenvectors of the Exact DMD.
xGEDMDQ does the same as xGEDMD but uses a QR factorization based
compression of the data.
See: Z. Drmac: A LAPACK implementation of the Dynamic Mode
Decomposition I. Technical report. AIMDyn Inc. and LAPACK Working
Note 298.
Developed and coded by Zlatko Drmac, Faculty of Science, University
of Zagreb. In cooperation with AIMdyn Inc., Santa Barbara, CA. And
supported by (1) DARPA SBIR project "Koopman Operator-Based
Forecasting for Nonstationary Processes from Near-Term, Limited
Observational Data", Contract No: W31P4Q-21-C-0007; (2) DARPA PAI
project "Physics-Informed Machine Learning Methodologies", Contract
No: HR0011-18-9-0033; (3) DARPA MoDyL project "A Data-Driven,
Operator-Theoretic Framework for Space-Time Analysis of Process
Dynamics", Contract No: HR0011-16-C-0116. Any opinions, findings and
conclusions or recommendations expressed in this material are those of
the author and do not necessarily reflect the views of the DARPA SBIR
Program Office. Distribution Statement A: Approved for Public Release,
Distribution Unlimited. Cleared by DARPA on September 29, 2022
Adding Dynamic Mode Decomposition (DMD) into LAPACK by @dbielich in
PR 736
Update C prototypes and LAPACKE interfaces for ?GEDMD/?GEDMDQ by
@martin-frbg in PR 880
Truncated QR with Column Pivoting
The routine computes a truncated (rank K) or full rank Householder
QR factorization with column pivoting of a real M-by-N matrix A
using Level 3 BLAS.
The truncation criteria (i.e. when to stop the factorization) can
be any of the following: (1) The input parameter KMAX, the maximum
number of columns KMAX to factorize; (2) The input parameter ABSTOL,
the absolute tolerance for the maximum column 2-norm of the residual
matrix R22(K); (3) The input parameter RELTOL, the tolerance for the
maximum column 2-norm matrix of the residual matrix R22(K) divided by
the maximum column 2-norm of the original matrix A, which is equal
to abs(R(1,1)). The algorithm stops when any of these conditions is
first satisfied, otherwise the whole matrix A is factorized.
Truncated QR with Column Pivoting by @scr2016 in PR 891
Reciprocal Scaling of complex vectors
[C/Z]RSCL multiplies an n-element complex vector x by the complex
scalar 1/a. This is done without overflow or underflow as long as
the final result x/a does not overflow or underflow.
See: "An algorithm for scaling vectors by the reciprocal
of a complex number", Weslley da Silva Pereira,
[arXiv:2311.05736](https://arxiv.org/abs/2311.05736)
Adds CRSCL by @weslleyspereira in PR 839
Improvements in the 64-bit API
Fix CBLAS tests with 64-bit indexing by @svillemot in PR 767
Add Index-64 API as extended API with _64 suffix for CBLAS by
@mkrainiuk in PR 846
Revert "Add Index-64 API as extended API with _64 suffix for CBLAS"
by @langou in PR 856
Add Index-64 API as extended API with _64 suffix for CBLAS by
@mkrainiuk in PR 867
Create DOCS/CBLAS.md by @mkrainiuk in PR 863
Reduce number of macros in fortran compilation line for BLAS _64
API by @mkrainiuk in PR 861
Bug fixes and other changes
Windows build fix by @ACSimon33 in PR 760
Added option to enable flat namespace on macOS by @ACSimon33 in PR 762
Fix bug in new test case for LAPACK 3.11 SLATRS3 by @dklyuchinskiy
in PR 755
Check for NaNs in *GECON by @weslleyspereira in PR 765
Fixed bug in array bounds in complex syl01 test by @dklyuchinskiyin
PR 758
Fix uninitialized M when quick return in DLARRD and SLARRD by
@akobotov in PR 769
In LAPACKE tgsen, allocate iwork when ijob = 0. Fixes #772. by
@mgates3 in PR 773
Fix SLATRS3 and CLATRS3 tests by @bartoldeman in PR 764
Fix uninitialized out variables in LARR functions by @echeresh in
PR 775
Warnings supression in some LAPACKE functions by @jgpallero in PR 780
Revert "Warnings supression in some LAPACKE functions" by @langou
in PR 781
Warnings supression and deletion of unnecessary check in some LAPACKE
xLARFB functions by @jgpallero in PR 782
remove redundant space from xerbla call sbgv/hbgv by @dklyuchinskiy
in PR 792
don窶冲 subtract N_DEFLATED from istop twice by @thijssteel in PR 794
fix rfp test for DIAG = U by @dklyuchinskiy in PR 796
fix bug in complex precision tests (c|z)het21 by @EduardFedorenkov
in PR 798
CMake: Disable TEST_FORTRAN_COMPILER by @jschueller in PR 761
Fix typos in documentation by @angsch in PR 750
Add minimum permissions to workflows by @gabibguti in PR 804
Add numerical tests for trevc3 by @angsch in PR 682
Remove legacy function LABAD by @angsch in PR 805
Refactor xGEBAL by @eprovst in PR 808
Fix typos and errors in comments by @jip in PR 809
cmake: allow setting a prefix for the library names by @joseeroman
in PR 810
Fix typos in comments by @jip in PR 811
fix #813 by @langou in PR 814
Replace the (partially defined) constant index variable INDIBL in
?SBGVX and related by @martin-frbg in PR 807
CTGEVC, ZTGEVC: fix typo in description of VR argument by @svillemot
in PR 812
Add Security Policy by @gabibguti in PR 819
typos by @musvaage in PR 820
extend tests for error exit sysv sytd2 gehd2 by @dklyuchinskiy in
PR 795
CMake: avoid "make" in blas++ and lapack++ by @nim65s in PR 821
appveyor: output test failures by @nim65s in PR 822
Reference actions by commit SHA by @gabibguti in PR 829
LAPACKE interfaces for [cz]unhr_col and [sd]orhr_col by @sknepper
in PR 827
fix segfault problem when executing LAPACKE_*geqrt on row major #766
by @sbite0138 in PR 768
Adds comment related to zero-sized matrix B in GELSY by
@weslleyspereira in PR 833
update brief descriptions of function purpose, Closes #230 by
@weslleyspereira in PR 831
Fix scaling in (S/D)TGSNA, fix #103, thanks to @elivanova by
@weslleyspereira in PR 830
Exits xLARUV when N < 1 by @weslleyspereira in PR 837
Create GitHub action to test CMake build system on Windows by
@weslleyspereira in PR 524
Fix bug in lapacke_[s,d]geesx by @weslleyspereira in PR 836
Removes unused SMIN from bdsqr by @weslleyspereira in PR 832
Use a better (more informative) message when we say the compiler
intr窶ｦ by @weslleyspereira in PR 845
Improve variants of Cholesky and QR by @angsch in PR 847
fixes #848 by @jaganmn in PR 849
Attempt to fix Appveyor on Windows by @angsch in PR 854
fix dlasd0 / slasd0 documentation issue by @mtowara in PR 855
Remove legacy warning for non IEEE 754 compliant machines by @angsch
in PR 852
Add verbose build to CI by @mkrainiuk in PR 858
[cz]hetrd_hb2st.F, [sd]sytrd_sb2st.F OpenMP fixes by @chrwarm in
PR 860
new doxygen group structure by @mgates3 in PR 802
Correct the order of returned eigenvalue and eigenvectors for 2x2
matrices with IL=IU in C/D/S/Z/STEMR by @aravindh-krishnamoorthy in
PR 867
fix nrhs=0 case in ?gelss by @eaberendeev in PR 876
Fix computation of uplo in LAPACKE_xlarfb by @vladimir-ch in PR 878
Fix workspace query corner cases by @angsch in PR 883
Fix actual arguments in some procedure calls by @mjacobse in PR 885
Improve Cholesky variants by @angsch in PR 889
Removes usage of Experimental (interactive) mode in ctest by
@weslleyspereira in PR 892
Updates the documentation of xGEMV and xGBMV related to when M=0
and N=0 by @weslleyspereira in PR 843
Add Scorecard by @gabibguti in PR 895
Remove auxiliary GEQRS, GELQS by @angsch in PR 900
CMake config for IntelLLVM (ifx) and NVIDIA HPC SDK (nvfortran)
by @ACSimon33 in PR 898
Fix build for CMake >= 3.27 by @scivision in PR 910
allow absolute GNU install dirs by @chayleaf in PR 893
dtgex2: add 2 to iwork length to prevent OOB interaction in Dtgsy2
by @soypat in PR 907
Adds OpenSSF Scorecard badge by @weslleyspereira in PR 896
Fix issue #908 related to accumulation in xLASSQ by @weslleyspereira
in PR 909
Apply ROUNDUP_LWORK function in lapack by @kleineLi in PR 904
Compilation of LAPACKE possibly independent from Fortran by
@weslleyspereira in PR 834
Always use C as linker language for CBLAS by @weslleyspereira in
PR 920
Uses Valgrind for ExperimentalMemCheck in ctest by @weslleyspereira
in PR 844
Adding in quotes in cmake for Intel ifx and linux build by @colleeneb
in PR 922
Fix complex BDSQR maxit by @pleshkovvli in PR 927
xORBDB6/xUNBDB6: fix a constant by @christoph-conrads in PR 928
Fixed Fortran preprocessor flag for NAG Fortran compiler by @ACSimon33
in PR 939
Fixed void main() for AppleClang by @ACSimon33 in PR 940
MAIN commitmail json YAML
math/py-numpy: actually blas=blas (cblas implicit) for more correct linkage
MAIN commitmail json YAML
pkgsrc/devel/py-pybind11/ALTERNATIVES@1.1
/
diff
pkgsrc/devel/py-pybind11/Makefile@1.18 / diff
pkgsrc/devel/py-pybind11/PLIST@1.8 / diff
pkgsrc/devel/py-pybind11/buildlink3.mk@1.4 / diff
pkgsrc/devel/py-pybind11/Makefile@1.18 / diff
pkgsrc/devel/py-pybind11/PLIST@1.8 / diff
pkgsrc/devel/py-pybind11/buildlink3.mk@1.4 / diff
devel/py-pybind11: resolve the self-conflict
This renames the pybind11-config script with a versioned suffix as done
elsewhere. The buildlink file provides the unsuffixed script for dependents
to use.
This renames the pybind11-config script with a versioned suffix as done
elsewhere. The buildlink file provides the unsuffixed script for dependents
to use.
MAIN commitmail json YAML
lang/python312: fix NIS detection
This ensures the configure script finds the NIS headers just like the
Makefile did by adding include directories.
This ensures the configure script finds the NIS headers just like the
Makefile did by adding include directories.
MAIN commitmail json YAML
lang/python311: fix NIS detection
This ensures the configure script finds the NIS headers just like the
Makefile did by adding include directories.
This ensures the configure script finds the NIS headers just like the
Makefile did by adding include directories.
MAIN commitmail json YAML
math/py-scipy: correct linking with netlib BLAS
This fixes _superlu.so ending up without liblas linkage, which rendered parts
of scipy defunct. This features subtle interaction with the meson build logic.
Hopefully a new version handles distinct BLAS and CBLAS explictly.
Netlib and openblas variants are the only supported choices right now. It is
open how we'd interface with the custom logic regarding framework.accelerate
or mkl. This is work in progress upstream, and I am trying to influence it
so that a blaswrap package approach based on pkg-config files would work.
This fixes _superlu.so ending up without liblas linkage, which rendered parts
of scipy defunct. This features subtle interaction with the meson build logic.
Hopefully a new version handles distinct BLAS and CBLAS explictly.
Netlib and openblas variants are the only supported choices right now. It is
open how we'd interface with the custom logic regarding framework.accelerate
or mkl. This is work in progress upstream, and I am trying to influence it
so that a blaswrap package approach based on pkg-config files would work.
MAIN commitmail json YAML
math/py-numpy: remove acclerate.framework and unnecessary CPPFLAGS from bl3
MAIN commitmail json YAML
CHANGES-2023: fix bad ssh-audit entry
MAIN commitmail json YAML
security/ssh-audit: fix previous commit from wrong directory, addding patch
MAIN commitmail json YAML
doc: Updated wip/ssh-audit to 3.1.0nb1
MAIN commitmail json YAML
security/ssh-audit: update to 3.1.0 with patch for terrapin
upstream changes since 3.0.0:
v3.2.0-dev (???)
Expanded filter of CBC ciphers to flag for the Terrapin vulnerability. It now includes
more rarely found ciphers.
v3.1.0 (2023-12-20)
Added test for the Terrapin message prefix truncation vulnerability (CVE-2023-48795).
Dropped support for Python 3.7 (EOL was reached in June 2023).
Added Python 3.12 support.
In server policies, reduced expected DH modulus sizes from 4096 to 3072 to match
the online hardening guides (note that 3072-bit moduli provide the equivalent of
128-bit symmetric security).
In Ubuntu 22.04 client policy, moved host key types sk-ssh-ed25519@openssh.com and
ssh-ed25519 to the end of all certificate types.
Updated Ubuntu Server & Client policies for 20.04 and 22.04 to account for key exchange
list changes due to Terrapin vulnerability patches.
Re-organized option host key types for OpenSSH 9.2 server policy to correspond with
updated Debian 12 hardening guide.
Added built-in policies for OpenSSH 9.5 and 9.6.
Added an additional_notes field to the JSON output.
upstream changes since 3.0.0:
v3.2.0-dev (???)
Expanded filter of CBC ciphers to flag for the Terrapin vulnerability. It now includes
more rarely found ciphers.
v3.1.0 (2023-12-20)
Added test for the Terrapin message prefix truncation vulnerability (CVE-2023-48795).
Dropped support for Python 3.7 (EOL was reached in June 2023).
Added Python 3.12 support.
In server policies, reduced expected DH modulus sizes from 4096 to 3072 to match
the online hardening guides (note that 3072-bit moduli provide the equivalent of
128-bit symmetric security).
In Ubuntu 22.04 client policy, moved host key types sk-ssh-ed25519@openssh.com and
ssh-ed25519 to the end of all certificate types.
Updated Ubuntu Server & Client policies for 20.04 and 22.04 to account for key exchange
list changes due to Terrapin vulnerability patches.
Re-organized option host key types for OpenSSH 9.2 server policy to correspond with
updated Debian 12 hardening guide.
Added built-in policies for OpenSSH 9.5 and 9.6.
Added an additional_notes field to the JSON output.
MAIN commitmail json YAML
pkg-vulnerabilities: set affected R version < 3.3.3 instead of dropping the line
Sorry. According to
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=857466
3.3.3 was the upstream release fixing it. Not seeing this in NEWS in R sources,
though.
Sorry. According to
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=857466
3.3.3 was the upstream release fixing it. Not seeing this in NEWS in R sources,
though.
MAIN commitmail json YAML
doc: Updated math/R to 4.2.3
MAIN commitmail json YAML
pkgsrc/math/R/Makefile@1.249
/
diff
pkgsrc/math/R/distinfo@1.98 / diff
pkgsrc/math/R/patches/patch-m4_R.m4@1.3 / diff
pkgsrc/math/R/distinfo@1.98 / diff
pkgsrc/math/R/patches/patch-m4_R.m4@1.3 / diff
math/R: update from 4.2.0 to patch release 4.2.3 (current upstream is 4.3.2)
Only the small update because of freeze. 4.2.0 is just outdated, 4.2.3 is from
March this year, 4.3.2 available since end of October.
CHANGES IN R 4.2.3:
C-LEVEL FACILITIES:
* The definition of DL_FUNC in R_ext/Rdynload.h has been changed to
be fully C-compliant. This means that functions loaded _via_ for
example R_GetCCallable need to be cast to an appropriate type if
they have any arguments.
* .Machine has a new element sizeof.time_t to identify old systems
with a 32-bit type and hence a limited range of date-times (and
limited support for dates millions of years from present).
PACKAGE INSTALLATION:
* (Windows) The default C++ standard had accidentally been left at
C++11 when it was changed to C++14 on Unix.
BUG FIXES:
* As "POSIXlt" objects may be "partially filled" and their list
components meant to be recycled, length() now is the length of
the longest component.
* as.POSIXlt.Date() could underflow for dates in the far past (more
than half a million years BCE).
* as.Date.POSIXlt(x) would return "1970-01-01" instead of NA in R
4.2.2, e.g., for
x <- as.POSIXlt(c("2019-01-30","2001-1-1"))
x$mon <- c(0L, NA); as.Date(x)
* R CMD check failed to apply enabled _R_CHECK_SUGGESTS_ONLY_ to
examples and vignettes (regression in R 4.2.0).
* R CMD check did not re-build vignettes in separate processes by
default (regression in R 4.2.0).
* Running examples from HTML documentation now restores previous
knitr settings and options (PR#18420).
* Quartz: fonts are now located using Core Graphics API instead of
deprecated ATS which is no longer supported in the macOS 13 SDK
(PR#18426). This also addresses an issue where the currently
used font in the Quartz device context was not correctly
retained.
* (Windows) Math symbols in text drawing functions are again
rendered correctly (PR#18440). This fixes a regression in R
4.2.1 caused by a fix in PR#18382 which uncovered an issue in
GraphApp due to which the symbol charset was not used with TT
Symbol font face.
* (Windows) Installing a package with a src/Makefile.{win,ucrt}
file includes ~/.R/Makevars.win64 in the search for user
makevars, as documented in "R Installation and Administration"
and done for packages with a src/Makevars.{win,ucrt} file.
* format(<POSIXlt_w/_unbalanced_sec>, "....%OS<n>") with n > 0 no
longer accidentally uses the unbalanced seconds, thanks to
Suharto Anggono's report (including patch) in PR#18448.
* solve.default(a, b) works around issues with some versions of
LAPACK when a contains NA or NaN values.
* When UseMethod() cannot dispatch, it no longer segfaults
producing the error message in case of a long class(), thanks to
Joris Vankerschaver's report (including patch) in PR#18447.
* When example(foo, ..) produces graphics on an interactive device
it needs to open itself, it now leaves devAskNewPage() unchanged
even when it was FALSE, thus fixing a 14 years old '<FIXME>'.
* packageDescription() again catches errors from encoding
conversions. This also fixes broken packageVersion() in C locale
on systems where iconv does not support transliteration.
CHANGES IN R 4.2.2:
NEW FEATURES:
* tools::Rdiff(useDiff = TRUE) checks for the presence of an
external diff command and switches to useDiff = FALSE if none is
found. This allows R CMD Rdiff to always work.
* On Windows, environment variable R_LIBCURL_SSL_REVOKE_BEST_EFFORT
can be used to switch to only 'best-effort' SSL certificate
revocation checks with the default "libcurl" download method.
This reduces security, but may be needed for downloads to work
with MITM proxies (PR#18379).
* (macOS) The run-time check for libraries from XQuartz for X11 and
Tcl/Tk no longer uses otool from the Apple Developer Tools
(PR#18400).
* The LaTeX style for producing the PDF manuals, Rd.sty, now loads
the standard amsmath, amsfonts and amssymb packages for greater
coverage of math commands in the Rd \eqn and \deqn macros. The
\mathscr LaTeX command is also provided (via the mathrsfs
package, if available, or the amsfonts bundle otherwise),
fulfilling the wish of PR#18398.
* (Windows) The default format of readClipboard() and
writeClipboard() has been changed to 13 (CF_UNICODETEXT).
INSTALLATION on a UNIX-ALIKE:
* The PDF manuals (if built) can be compacted by the new target
make compact-pdf (at the top level or in directory doc/manual).
* There is now configure support for LLVM clang 15 on Linux, which
defaults to position-independent (PIE) executables whereas
gfortran does not.
* Many small changes to ease compilation (and suppress warnings)
with LLVM clang 15.
BUG FIXES:
* Rscript -e would fail if stdin were closed (Reported by Henrik
Bengtsson.)
* qt(*, log.p=TRUE) in outer tails no longer produces NaN in its
final steps, thus fixing PR#18360.
* tools::Rd2latex() now escapes hashes and ampersands when writing
URLs, fixing LaTeX errors with such URLs in \tabular.
* When isGeneric(f, fdef=*) is used with mismatching names, the
warning is better understandable; reported (with fix) in PR#18370
by Gabe Becker.
* poly(x, n) now works again (and is now documented) when x is a
"Date" or "POSIXct" object, or of another class while fulfilling
mode(x) == "numeric". This also enables poly(x, *, raw=TRUE) for
such variables. Reported by Michael Chirico to R-devel.
* write.table(), write.csv() and write.csv2() restore their
numerical precision (internal equivalent of digits = 15) after an
interrupt (PR#18384).
* One can now read also byte FF from a clipboard connection
(PR#18385).
* source("") and source(character()) now give more helpful error
messages.
* R CMD check --as-cran set _R_CHECK_TIMINGS_ too late to have the
intended effect.
* as.POSIXlt(x) now also works with very large dates x, fixing
PR#18401 reported by Hannes M"uhleisen.
* Files can now be extracted even from very large zip archives
(PR#18390, thanks to Martin Jakt).
* Non-finite objects of class "POSIXlt" are now correctly coerced
to classes "Date" and "POSIXct"; following up on the extension to
format() them correctly.
* Added methods for is.finite(), is.infinite() and is.nan() for
"POSIXlt" date-time objects.
BUG FIXES on Windows:
* Non-ASCII characters are now properly displayed on Windows in
windows created using GraphApp via e.g. winDialogString thanks to
a workaround for an at least surprising Windows behavior with
UTF-8 as the system encoding (PR#18382).
* Find and replace operations work again in the script editor in
Rgui on Windows.
* Computation of window size based on requested client size in
GraphApp when running in a multi-byte locale on Windows has been
fixed (regression in R 4.2.0 for users of systems where R 4.1
used a single-byte locale). Rgui again respects the number of
console rows and columns given in Rconsole file.
* Rterm support for Alt+xxx sequences has been fixed to produce the
corresponding character (only) once. This fixes pasting text with
tilde on Italian keyboard (PR#18391).
CHANGES IN R 4.2.1:
NEW FEATURES:
* New function utils::findCRANmirror() to find out if a CRAN mirror
has been selected, otherwise fallback to the main site. This
behaves in the same way as tools::CRAN_package_db() and is
intended for packages wishing to access CRAN for purposes other
than installing packages.
The need for this was shown by a day when the main CRAN website
was offline and a dozen or so packages which had its URL
hardcoded failed their checks.
INSTALLATION on a UNIX-ALIKE:
* The libraries searched for by --with-blas (without a value) now
include BLIS (after OpenBLAS but before ATLAS). And on macOS,
the Accelerate framework (after ATLAS). (This is patterned after
the AX_BLAS macro from the Autoconf Archive.)
* The included LAPACK sources have been updated to 3.10.1.
UTILITIES:
* The (full path to) the command tidy to be used for HTML
validation can be set by environment variable R_TIDYCMD.
* Setting environment variable _R_CHECK_RD_VALIDATE_RD2HTML_ to a
false value will override R CMD check --as-cran and turn off HTML
validation. This provides a way to circumvent a problematic
tidy.
The 2006 version that ships with macOS is always skipped.
C-LEVEL FACILITIES:
* The undocumented legacy declarations of Sint, Sfloat, SINT_MAX
and SINT_MIN in header R.h are deprecated.
BUG FIXES:
* fisher.test(d) no longer segfaults for "large" d; fixing PR#18336
by preventing/detecting an integer overflow reliably.
* tar(., files=*) now produces correctly the warning about invalid
UID or GID of files, fixing PR#18344, reported by Martin Morgan.
* tk_choose.files() with multi = FALSE misbehaved on paths
containing spaces (PR#18334) (regression introduced in R 4.0.0).
* sort(x, partial = ind, *) now works correctly notably for the
non-default na.last = FALSE or TRUE, fixing PR#18335 reported by
James Edwards.
* Environment variable _R_CHECK_XREFS_REPOSITORIES_ is only used
for checking .Rd cross-references in R CMD check (as documented)
and not for other uses looking for a CRAN mirror.
* The search for a CRAN mirror when checking packages now uses
getOption("repos") if that specifies a CRAN mirror, even when it
does not also specify all three Bioconductor repositories (as was
previously required).
* The HTML code generated by tools::Rd2HTML() has been improved to
pass tidy 5.8.0.
BUG FIXES on Windows:
* Writing to a clipboard connection works again, fixing a
regression in R 4.2.0 (PR#18332). Re-using a closed clipboard
connection no longer issues a spurious warning about an ignored
encoding argument.
* C function getlocale no longer attempts to query an unsupported
category from the OS, even when requested at R level, which may
cause crashes when R 4.2.0 (which uses UCRT) is embedded
(reported by Kevin Ushey).
* Accent keys now work in GraphApp Unicode windows, which are used
by Rgui whenever running in a multibyte locale (so also in UTF-8,
hence fixing a regression in R 4.2.0 for users of systems where R
4.1 used a single-byte locale).
* Completion in Rgui now works also with non-ASCII characters.
* Rgui no longer truncates usage information with --help.
* Text injection from external applications via SendInput now works
in GraphApp Unicode windows, fixing a regression in R 4.2.0 for
Rgui users of systems where R 4.1 used a single-byte locale but R
4.2.0 uses UTF-8.
* Performance of txtProgressBar() in Rgui when running in a
multi-byte locale has been improved (fixing a performance
regression in R 4.2.0 for users of systems where R 4.1 used a
single-byte locale).
* The script editor in Rgui now works also on systems using UTF-8
as the native encoding. Users of the script editor have to
convert their scripts with non-ASCII characters to UTF-8 before
reading them in R 4.2.1 or newer (on recent Windows where UTF-8
is used). This fixes a regression in R 4.2.0, which prevented
some operations with scripts when they contained non-ASCII
characters.
Only the small update because of freeze. 4.2.0 is just outdated, 4.2.3 is from
March this year, 4.3.2 available since end of October.
CHANGES IN R 4.2.3:
C-LEVEL FACILITIES:
* The definition of DL_FUNC in R_ext/Rdynload.h has been changed to
be fully C-compliant. This means that functions loaded _via_ for
example R_GetCCallable need to be cast to an appropriate type if
they have any arguments.
* .Machine has a new element sizeof.time_t to identify old systems
with a 32-bit type and hence a limited range of date-times (and
limited support for dates millions of years from present).
PACKAGE INSTALLATION:
* (Windows) The default C++ standard had accidentally been left at
C++11 when it was changed to C++14 on Unix.
BUG FIXES:
* As "POSIXlt" objects may be "partially filled" and their list
components meant to be recycled, length() now is the length of
the longest component.
* as.POSIXlt.Date() could underflow for dates in the far past (more
than half a million years BCE).
* as.Date.POSIXlt(x) would return "1970-01-01" instead of NA in R
4.2.2, e.g., for
x <- as.POSIXlt(c("2019-01-30","2001-1-1"))
x$mon <- c(0L, NA); as.Date(x)
* R CMD check failed to apply enabled _R_CHECK_SUGGESTS_ONLY_ to
examples and vignettes (regression in R 4.2.0).
* R CMD check did not re-build vignettes in separate processes by
default (regression in R 4.2.0).
* Running examples from HTML documentation now restores previous
knitr settings and options (PR#18420).
* Quartz: fonts are now located using Core Graphics API instead of
deprecated ATS which is no longer supported in the macOS 13 SDK
(PR#18426). This also addresses an issue where the currently
used font in the Quartz device context was not correctly
retained.
* (Windows) Math symbols in text drawing functions are again
rendered correctly (PR#18440). This fixes a regression in R
4.2.1 caused by a fix in PR#18382 which uncovered an issue in
GraphApp due to which the symbol charset was not used with TT
Symbol font face.
* (Windows) Installing a package with a src/Makefile.{win,ucrt}
file includes ~/.R/Makevars.win64 in the search for user
makevars, as documented in "R Installation and Administration"
and done for packages with a src/Makevars.{win,ucrt} file.
* format(<POSIXlt_w/_unbalanced_sec>, "....%OS<n>") with n > 0 no
longer accidentally uses the unbalanced seconds, thanks to
Suharto Anggono's report (including patch) in PR#18448.
* solve.default(a, b) works around issues with some versions of
LAPACK when a contains NA or NaN values.
* When UseMethod() cannot dispatch, it no longer segfaults
producing the error message in case of a long class(), thanks to
Joris Vankerschaver's report (including patch) in PR#18447.
* When example(foo, ..) produces graphics on an interactive device
it needs to open itself, it now leaves devAskNewPage() unchanged
even when it was FALSE, thus fixing a 14 years old '<FIXME>'.
* packageDescription() again catches errors from encoding
conversions. This also fixes broken packageVersion() in C locale
on systems where iconv does not support transliteration.
CHANGES IN R 4.2.2:
NEW FEATURES:
* tools::Rdiff(useDiff = TRUE) checks for the presence of an
external diff command and switches to useDiff = FALSE if none is
found. This allows R CMD Rdiff to always work.
* On Windows, environment variable R_LIBCURL_SSL_REVOKE_BEST_EFFORT
can be used to switch to only 'best-effort' SSL certificate
revocation checks with the default "libcurl" download method.
This reduces security, but may be needed for downloads to work
with MITM proxies (PR#18379).
* (macOS) The run-time check for libraries from XQuartz for X11 and
Tcl/Tk no longer uses otool from the Apple Developer Tools
(PR#18400).
* The LaTeX style for producing the PDF manuals, Rd.sty, now loads
the standard amsmath, amsfonts and amssymb packages for greater
coverage of math commands in the Rd \eqn and \deqn macros. The
\mathscr LaTeX command is also provided (via the mathrsfs
package, if available, or the amsfonts bundle otherwise),
fulfilling the wish of PR#18398.
* (Windows) The default format of readClipboard() and
writeClipboard() has been changed to 13 (CF_UNICODETEXT).
INSTALLATION on a UNIX-ALIKE:
* The PDF manuals (if built) can be compacted by the new target
make compact-pdf (at the top level or in directory doc/manual).
* There is now configure support for LLVM clang 15 on Linux, which
defaults to position-independent (PIE) executables whereas
gfortran does not.
* Many small changes to ease compilation (and suppress warnings)
with LLVM clang 15.
BUG FIXES:
* Rscript -e would fail if stdin were closed (Reported by Henrik
Bengtsson.)
* qt(*, log.p=TRUE) in outer tails no longer produces NaN in its
final steps, thus fixing PR#18360.
* tools::Rd2latex() now escapes hashes and ampersands when writing
URLs, fixing LaTeX errors with such URLs in \tabular.
* When isGeneric(f, fdef=*) is used with mismatching names, the
warning is better understandable; reported (with fix) in PR#18370
by Gabe Becker.
* poly(x, n) now works again (and is now documented) when x is a
"Date" or "POSIXct" object, or of another class while fulfilling
mode(x) == "numeric". This also enables poly(x, *, raw=TRUE) for
such variables. Reported by Michael Chirico to R-devel.
* write.table(), write.csv() and write.csv2() restore their
numerical precision (internal equivalent of digits = 15) after an
interrupt (PR#18384).
* One can now read also byte FF from a clipboard connection
(PR#18385).
* source("") and source(character()) now give more helpful error
messages.
* R CMD check --as-cran set _R_CHECK_TIMINGS_ too late to have the
intended effect.
* as.POSIXlt(x) now also works with very large dates x, fixing
PR#18401 reported by Hannes M"uhleisen.
* Files can now be extracted even from very large zip archives
(PR#18390, thanks to Martin Jakt).
* Non-finite objects of class "POSIXlt" are now correctly coerced
to classes "Date" and "POSIXct"; following up on the extension to
format() them correctly.
* Added methods for is.finite(), is.infinite() and is.nan() for
"POSIXlt" date-time objects.
BUG FIXES on Windows:
* Non-ASCII characters are now properly displayed on Windows in
windows created using GraphApp via e.g. winDialogString thanks to
a workaround for an at least surprising Windows behavior with
UTF-8 as the system encoding (PR#18382).
* Find and replace operations work again in the script editor in
Rgui on Windows.
* Computation of window size based on requested client size in
GraphApp when running in a multi-byte locale on Windows has been
fixed (regression in R 4.2.0 for users of systems where R 4.1
used a single-byte locale). Rgui again respects the number of
console rows and columns given in Rconsole file.
* Rterm support for Alt+xxx sequences has been fixed to produce the
corresponding character (only) once. This fixes pasting text with
tilde on Italian keyboard (PR#18391).
CHANGES IN R 4.2.1:
NEW FEATURES:
* New function utils::findCRANmirror() to find out if a CRAN mirror
has been selected, otherwise fallback to the main site. This
behaves in the same way as tools::CRAN_package_db() and is
intended for packages wishing to access CRAN for purposes other
than installing packages.
The need for this was shown by a day when the main CRAN website
was offline and a dozen or so packages which had its URL
hardcoded failed their checks.
INSTALLATION on a UNIX-ALIKE:
* The libraries searched for by --with-blas (without a value) now
include BLIS (after OpenBLAS but before ATLAS). And on macOS,
the Accelerate framework (after ATLAS). (This is patterned after
the AX_BLAS macro from the Autoconf Archive.)
* The included LAPACK sources have been updated to 3.10.1.
UTILITIES:
* The (full path to) the command tidy to be used for HTML
validation can be set by environment variable R_TIDYCMD.
* Setting environment variable _R_CHECK_RD_VALIDATE_RD2HTML_ to a
false value will override R CMD check --as-cran and turn off HTML
validation. This provides a way to circumvent a problematic
tidy.
The 2006 version that ships with macOS is always skipped.
C-LEVEL FACILITIES:
* The undocumented legacy declarations of Sint, Sfloat, SINT_MAX
and SINT_MIN in header R.h are deprecated.
BUG FIXES:
* fisher.test(d) no longer segfaults for "large" d; fixing PR#18336
by preventing/detecting an integer overflow reliably.
* tar(., files=*) now produces correctly the warning about invalid
UID or GID of files, fixing PR#18344, reported by Martin Morgan.
* tk_choose.files() with multi = FALSE misbehaved on paths
containing spaces (PR#18334) (regression introduced in R 4.0.0).
* sort(x, partial = ind, *) now works correctly notably for the
non-default na.last = FALSE or TRUE, fixing PR#18335 reported by
James Edwards.
* Environment variable _R_CHECK_XREFS_REPOSITORIES_ is only used
for checking .Rd cross-references in R CMD check (as documented)
and not for other uses looking for a CRAN mirror.
* The search for a CRAN mirror when checking packages now uses
getOption("repos") if that specifies a CRAN mirror, even when it
does not also specify all three Bioconductor repositories (as was
previously required).
* The HTML code generated by tools::Rd2HTML() has been improved to
pass tidy 5.8.0.
BUG FIXES on Windows:
* Writing to a clipboard connection works again, fixing a
regression in R 4.2.0 (PR#18332). Re-using a closed clipboard
connection no longer issues a spurious warning about an ignored
encoding argument.
* C function getlocale no longer attempts to query an unsupported
category from the OS, even when requested at R level, which may
cause crashes when R 4.2.0 (which uses UCRT) is embedded
(reported by Kevin Ushey).
* Accent keys now work in GraphApp Unicode windows, which are used
by Rgui whenever running in a multibyte locale (so also in UTF-8,
hence fixing a regression in R 4.2.0 for users of systems where R
4.1 used a single-byte locale).
* Completion in Rgui now works also with non-ASCII characters.
* Rgui no longer truncates usage information with --help.
* Text injection from external applications via SendInput now works
in GraphApp Unicode windows, fixing a regression in R 4.2.0 for
Rgui users of systems where R 4.1 used a single-byte locale but R
4.2.0 uses UTF-8.
* Performance of txtProgressBar() in Rgui when running in a
multi-byte locale has been improved (fixing a performance
regression in R 4.2.0 for users of systems where R 4.1 used a
single-byte locale).
* The script editor in Rgui now works also on systems using UTF-8
as the native encoding. Users of the script editor have to
convert their scripts with non-ASCII characters to UTF-8 before
reading them in R 4.2.1 or newer (on recent Windows where UTF-8
is used). This fixes a regression in R 4.2.0, which prevented
some operations with scripts when they contained non-ASCII
characters.
MAIN commitmail json YAML
mk/blas.buildlink3.mk: add missing variables to effects, undef C ABI libs
(... if C interface was not desired)
(... if C interface was not desired)
MAIN commitmail json YAML
pkg-vulnerabilities: drop R buffer overflow that applied to 3.3, ages ago
MAIN commitmail json YAML
pkgsrc/graphics/opencv/distinfo@1.59
/
diff
pkgsrc/graphics/opencv/patches/patch-cmake_OpenCVFindLAPACK.cmake@1.2 / diff
pkgsrc/graphics/opencv/patches/patch-cmake_OpenCVFindLAPACK.cmake@1.2 / diff
graphics/opencv: avoid name-clash of complex macro for gcc<4.8
This adds #undef complex explicitly, to fix the build for older gccs that
don't have that in their headers for C++ code.
This adds #undef complex explicitly, to fix the build for older gccs that
don't have that in their headers for C++ code.
MAIN commitmail json YAML
graphics/opencv: disable stupid extern "C" that broke NetBSD build
For no good reason, perhaps for ancient LAPACK headers, the wrapper header
puts the includes into extern "C". This causes some compilers to complain
because LAPACK headers do C++ stuff if they see a C++ compiler and then
add extern "C" themselves.
For no good reason, perhaps for ancient LAPACK headers, the wrapper header
puts the includes into extern "C". This causes some compilers to complain
because LAPACK headers do C++ stuff if they see a C++ compiler and then
add extern "C" themselves.
MAIN commitmail json YAML
doc: Updated graphics/opencv-contrib-face to 3.4.17
MAIN commitmail json YAML
doc: Updated graphics/opencv to 3.4.17
MAIN commitmail json YAML
pkgsrc/graphics/opencv-contrib-face/Makefile@1.35
/
diff
pkgsrc/graphics/opencv-contrib-face/distinfo@1.27 / diff
pkgsrc/graphics/opencv/Makefile@1.123 / diff
pkgsrc/graphics/opencv/Makefile.common@1.18 / diff
pkgsrc/graphics/opencv/distinfo@1.58 / diff
pkgsrc/graphics/opencv/patches/patch-CMakeLists.txt@1.10 / diff
pkgsrc/graphics/opencv/patches/patch-cmake_OpenCVFindLAPACK.cmake@1.1 / diff
pkgsrc/graphics/opencv/patches/patch-cmake_OpenCVFindOpenEXR.cmake deleted
pkgsrc/graphics/opencv/patches/patch-cmake_checks_lapack__check.cpp deleted
pkgsrc/graphics/opencv/patches/patch-modules_core_src_hal__internal.cpp deleted
pkgsrc/graphics/opencv-contrib-face/distinfo@1.27 / diff
pkgsrc/graphics/opencv/Makefile@1.123 / diff
pkgsrc/graphics/opencv/Makefile.common@1.18 / diff
pkgsrc/graphics/opencv/distinfo@1.58 / diff
pkgsrc/graphics/opencv/patches/patch-CMakeLists.txt@1.10 / diff
pkgsrc/graphics/opencv/patches/patch-cmake_OpenCVFindLAPACK.cmake@1.1 / diff
pkgsrc/graphics/opencv/patches/patch-cmake_OpenCVFindOpenEXR.cmake deleted
pkgsrc/graphics/opencv/patches/patch-cmake_checks_lapack__check.cpp deleted
pkgsrc/graphics/opencv/patches/patch-modules_core_src_hal__internal.cpp deleted
opencv: version 3.4.17 with proper explicit BLAS (CBLAS + LAPACKE) usage
This does the small bugfix update from 3.4.16 to 3.4.17 and adds proper usage
of BLAS stuff. There was linkage to BLAS before via numpy, but the internal
explicit BLAS-using code was not built, as the CMake machinery did not find it.
This commit drops an actually counterproductive patch and adds pkg-config
calls to find the BLAS-related libraries. Note that vor opencv-contrib-face,
the BLAS choice during its build doesn't really enter the result, apparently,
but the build process does use it and it would not help to confuse matters there.
I am not sure if the buildlink3.mk should also add blas.buildlink3.mk now. It
does not feature numpy right now. Should it?
Next step should be move towards 4.x at least.
Upstream:
December, 2021
OpenCV 3.4.17 has been released. Bug fixes, optimizations and other enhancements
are propagated into OpenCV 4.5.5.
Long-lived OpenCV 3.x release series is here since 2015. We are going to reduce
support of 3.x branch in the future to move forward to OpenCV 5.0.
This does the small bugfix update from 3.4.16 to 3.4.17 and adds proper usage
of BLAS stuff. There was linkage to BLAS before via numpy, but the internal
explicit BLAS-using code was not built, as the CMake machinery did not find it.
This commit drops an actually counterproductive patch and adds pkg-config
calls to find the BLAS-related libraries. Note that vor opencv-contrib-face,
the BLAS choice during its build doesn't really enter the result, apparently,
but the build process does use it and it would not help to confuse matters there.
I am not sure if the buildlink3.mk should also add blas.buildlink3.mk now. It
does not feature numpy right now. Should it?
Next step should be move towards 4.x at least.
Upstream:
December, 2021
OpenCV 3.4.17 has been released. Bug fixes, optimizations and other enhancements
are propagated into OpenCV 4.5.5.
Long-lived OpenCV 3.x release series is here since 2015. We are going to reduce
support of 3.x branch in the future to move forward to OpenCV 5.0.
MAIN commitmail json YAML
pkgsrc/x11/qt5-qttools/Makefile@1.96
/
diff
pkgsrc/x11/qt5-qttools/distinfo@1.32 / diff
pkgsrc/x11/qt5-qttools/patches/patch-src_qdoc_configure.json@1.1 / diff
pkgsrc/x11/qt5-qttools/distinfo@1.32 / diff
pkgsrc/x11/qt5-qttools/patches/patch-src_qdoc_configure.json@1.1 / diff
x11/qt5-qttools: really make llvm dependency go away with explicit switch
This adds the explicit switch to qmake to avoid pulling in llvm even from
the environment by accident. It only changes the result for people who
tried disabling the suggested llvm option but hat interference.
This adds the explicit switch to qmake to avoid pulling in llvm even from
the environment by accident. It only changes the result for people who
tried disabling the suggested llvm option but hat interference.
MAIN commitmail json YAML
pkgsrc/x11/qt5-qtmultimedia/Makefile@1.97
/
diff
pkgsrc/x11/qt5-qtmultimedia/distinfo@1.33 / diff
pkgsrc/x11/qt5-qtmultimedia/options.mk@1.9 / diff
pkgsrc/x11/qt5-qtmultimedia/patches/patch-src_multimedia_configure.json@1.1 / diff
pkgsrc/x11/qt5-qtmultimedia/distinfo@1.33 / diff
pkgsrc/x11/qt5-qtmultimedia/options.mk@1.9 / diff
pkgsrc/x11/qt5-qtmultimedia/patches/patch-src_multimedia_configure.json@1.1 / diff
x11/qt5-qtmultimedia: fix backend choices (esp. deactivate openal)
This enables and disables audio backends explicitly via QMAKE_ARGS and
includes a patch from FreeBSD that adds the missing knob vor openal.
This enables and disables audio backends explicitly via QMAKE_ARGS and
includes a patch from FreeBSD that adds the missing knob vor openal.
MAIN commitmail json YAML
doc: Updated math/armadillo to 12.6.7
MAIN commitmail json YAML
pkgsrc/math/Makefile@1.582
/
diff
pkgsrc/math/armadillo/DESCR@1.1 / diff
pkgsrc/math/armadillo/Makefile@1.1 / diff
pkgsrc/math/armadillo/PLIST@1.1 / diff
pkgsrc/math/armadillo/buildlink3.mk@1.1 / diff
pkgsrc/math/armadillo/distinfo@1.1 / diff
pkgsrc/math/armadillo/patches/patch-CMakeLists.txt@1.1 / diff
pkgsrc/math/armadillo/DESCR@1.1 / diff
pkgsrc/math/armadillo/Makefile@1.1 / diff
pkgsrc/math/armadillo/PLIST@1.1 / diff
pkgsrc/math/armadillo/buildlink3.mk@1.1 / diff
pkgsrc/math/armadillo/distinfo@1.1 / diff
pkgsrc/math/armadillo/patches/patch-CMakeLists.txt@1.1 / diff
math/armadillo: C++ linear algebra library
longer form:
Armadillo is a high quality linear algebra library (matrix maths) for the
C++ language, aiming towards a good balance between speed and ease of use
Provides high-level syntax and functionality deliberately similar
to Matlab
Useful for algorithm development directly in C++, or quick conversion
of research code into production environments
Provides efficient classes for vectors, matrices and cubes; dense and
sparse matrices are supported
Integer, floating point and complex numbers are supported
A sophisticated expression evaluator (based on template meta-programming)
automatically combines several operations to increase speed and efficiency
Dynamic evaluation automatically chooses optimal code paths based on
detected matrix structures
Various matrix decompositions (eigen, SVD, QR, etc) are provided
through integration with LAPACK, or one of its high performance drop-in
replacements (eg. MKL or OpenBLAS)
Can automatically use OpenMP multi-threading (parallelisation) to speed
up computationally expensive operations
Distributed under the permissive Apache 2.0 license, useful for both
open-source and proprietary (closed-source) software
Can be used for machine learning, pattern recognition, computer vision,
signal processing, bioinformatics, statistics, finance, etc
longer form:
Armadillo is a high quality linear algebra library (matrix maths) for the
C++ language, aiming towards a good balance between speed and ease of use
Provides high-level syntax and functionality deliberately similar
to Matlab
Useful for algorithm development directly in C++, or quick conversion
of research code into production environments
Provides efficient classes for vectors, matrices and cubes; dense and
sparse matrices are supported
Integer, floating point and complex numbers are supported
A sophisticated expression evaluator (based on template meta-programming)
automatically combines several operations to increase speed and efficiency
Dynamic evaluation automatically chooses optimal code paths based on
detected matrix structures
Various matrix decompositions (eigen, SVD, QR, etc) are provided
through integration with LAPACK, or one of its high performance drop-in
replacements (eg. MKL or OpenBLAS)
Can automatically use OpenMP multi-threading (parallelisation) to speed
up computationally expensive operations
Distributed under the permissive Apache 2.0 license, useful for both
open-source and proprietary (closed-source) software
Can be used for machine learning, pattern recognition, computer vision,
signal processing, bioinformatics, statistics, finance, etc
MAIN commitmail json YAML
math/superlu: fix buildlink to runtime dep for shared lib change
MAIN commitmail json YAML
math/superlu: fix pkg-config usage and hence BLAS usage
MAIN commitmail json YAML
doc: Updated math/superlu to 6.0.1
MAIN commitmail json YAML
pkgsrc/math/superlu/Makefile@1.34
/
diff
pkgsrc/math/superlu/PLIST@1.5 / diff
pkgsrc/math/superlu/distinfo@1.12 / diff
pkgsrc/math/superlu/PLIST@1.5 / diff
pkgsrc/math/superlu/distinfo@1.12 / diff
math/superlu: update to 6.0.1, build shared lib, fix BLAS usage
This now links against the correct BLAS and installs a shared lib, as is
more customary for us. Upstream Changes:
October 17, 2020 Version 5.2.2
Applied a number of patches, merged a number of PRs.
Septtember 29, 2021 Version 5.3.0
Added CI with github Actions.
Applied a number of patches.
Cleaned up warnings.
April 5, 2023 Version 6.0.0
Add 64-bit indexing support and METIS ordering option.
August 5, 2023 Version 6.0.1
Minor fixes, mostly documentation and clean up warnings
This now links against the correct BLAS and installs a shared lib, as is
more customary for us. Upstream Changes:
October 17, 2020 Version 5.2.2
Applied a number of patches, merged a number of PRs.
Septtember 29, 2021 Version 5.3.0
Added CI with github Actions.
Applied a number of patches.
Cleaned up warnings.
April 5, 2023 Version 6.0.0
Add 64-bit indexing support and METIS ordering option.
August 5, 2023 Version 6.0.1
Minor fixes, mostly documentation and clean up warnings
MAIN commitmail json YAML
biology/Makefile: add recently added libpll package
MAIN commitmail json YAML
devel/R-tclkl2: remove controlled failure as pkg/56696 is resolved
My changes fixing the tcl install that broke this package went in. No
need to bail out anymore without DISPLAY.
My changes fixing the tcl install that broke this package went in. No
need to bail out anymore without DISPLAY.
MAIN commitmail json YAML
textproc/itstool: depend on py-libxml2 with the re-added symbols to un-break
MAIN commitmail json YAML
doc: Updated geography/pdal-lib to 2.5.6
MAIN commitmail json YAML
pkgsrc/geography/pdal-lib/Makefile@1.23
/
diff
pkgsrc/geography/pdal-lib/PLIST@1.2 / diff
pkgsrc/geography/pdal-lib/distinfo@1.5 / diff
pkgsrc/geography/pdal-lib/patches/patch-pdal_util_private_BacktraceExecinfo.cpp deleted
pkgsrc/geography/pdal-lib/PLIST@1.2 / diff
pkgsrc/geography/pdal-lib/distinfo@1.5 / diff
pkgsrc/geography/pdal-lib/patches/patch-pdal_util_private_BacktraceExecinfo.cpp deleted
pdal-lib: update to 2.5.6
Among various bug fixes, these are the changes since 2.2.0:
2.5.6
bug fixes
2.5.5
bug fixes
2.5.4
bug fixes
2.5.3
bug fixes
2.5.2
Enhancements
Provided allow_empty option to readers.gdal #3984
2.5.1
Enhancements
Optional debug in filters.csf to improve performance #3952 (thanks
@n4z4m3!)
Connection classes for readers.copc and readers.ept consolidated
(#3962)
2.5.0
Changes of Note
TileDB 2.3 now required for TileDB read/write support (#3722)
readers.fbx and readers.mrsid have been removed (#3841)
Make PDAL Locale agnostic (#3873) Thanks @jjimenezshaw!
Non-public symbols are now hidden on unix (#3931) Thanks @abellgithub!
PipelineExecutor class is now deprecated (#3937)
New Stages
readers.ptx (Thanks @dbrookes96!) supports reading the PTX
format(#3718)
writers.fbi and readers.fbi supports TerraSolid binary format(#3822)
(Thanks @alavenant!)
filters.trajectory estimates trajectory for certain data
configurations (#3743)
filters.geomdistance computes the (2D) distance of points to a given
geometry (#3891)
readers.stac dereferences STAC Catalogs to read point cloud data
(#3915)
filters.expression uses the same syntax as where to filter data
(#3930)
Enhancements
boundary_json GeoJSON added to pdal info output (#3750)
Sort COPC output by GPSTime if available (#3747)
filters.zsmooth enabled by default (#3785)
update googletest to 1.12.1 by in (#3917)
Support GDAL 64bit integer types if they are defined (#3795)
PROJJSON output now added to pdal info output (#3780)
QuickInfo now supports adding Metadata (#3894)
stage-n-push support for writers.copc (#3790)
pdal translate will not overwrite data by default (#3794)
'bounds' option to limit filters.overlay usage (#3815)
wmain usage of pdal comand for wide filename character support on
Windows (#3824)
binmode added to writers.gdal to count only points inside pixels
(#3840)
attr_dims and ogr_options options to writers.ogr (#3837) Thanks
@rcoup!
Add metadata to readers.las QuickInfo (#3897)
writers.copc.threads option (#3910)
Support spaces in dimension names (#3907)
writers.copc.a_srs option (#3908)
readers.copc outputs copc_info metadata on read (#3936)
2.4.3
Changes of Note
A significant memory leak in LAZ decompression was fixed #3814
PDAL's website is migrating to @readthedocs Thanks @j9ac9k! #3782
Enhancements
writers.copc remote file writing was added #3819
filters.overlay bounds option added #3815
laz-perf vendored code updated to 3.1.0 release #3821
Arbiter credentials now support profiles #3792
2.4.2
Changes of Note
None
Enhancements
#3769 workshop documentation updates (Thanks @j9ac9k!)
2.4.1
Changes of Note
writers.copc now sorts chunks by GPStime, allowing better compression.
Various warnings for newer compilers have been eliminated.
Enhancements
Errors from the geotiff library are now directed to the console
(standard error).
readers.bpf now adds a count of the number of points to metadata.
The pdal info command now always writes a GeoJSON metadata entry of
the area boundary called boundary_json.
2.4.0
Changes of Note
A compiler that supports C++17 is now required to build PDAL or
include PDAL headers in your code.
The PDAL_STATIC_BUILD cmake option has been removed. We do not
support building PDAL as a static library, though it may work.
The behavior of readers.ept when specifying both bounds and polygon
options has changed such that a point must pass both the filters
independently in order to be accepted. (#3506)
readers.ept will now ignore the spatial reference on a clip region
if the point source has no spatial reference. This behavior is
consistent with filters.crop. (#3580)
readers.las and writers.las no longer support the laszip library. Both
stages now use the lazperf library, which is embedded into the PDAL
library. The compression option is still accepted in readers.las, but
is ignored. The compression option on writers.las still accepts the
LASZIP and LAZPERF , but those values are treated the same as TRUE.
PDAL now builds on MinGW, though future support depends on community
contributions.
Source code supporting las and ept has been moved to a private
namespace.
New Stages
readers.copc and writers.copc have been added to support reading
and writing of COPC files.
readers.smrmsg was added to read from post-processed MMS accuracy
files to be used with SBET data.
Enhancements
The performance of filters.litree has been improved. (#3518)
Support for time query/storage in readers.tiledb and writers.tiledb
has been added. (#3495)
Added various remote access support (AWS Fargate, AWS session token
support, Azure SAS token support). (#3496)
An error is now reported when reading a pipeline with multiple
leaf nodes.
Support for beam direction and origin in readers.rxp has been
added. (#3565)
Add a cmake macro PDAL_CREATE_PLUGIN that may simplify the creation
of some PDAL plugin stages. (#3588)
writers.null is now streamable. (#3591)
Added support for multiple output files in writers.ply (#3617 -
Thanks @longhuan2018)
filters.csf now permits selective output of debugging/analysis
files. (#3488)
Comments in JSON input files (pipelines) are now supported. (#3670)
Added support in writers.las for creating VLRs from metadata. (#3683)
Added query support origin query in version 1.1 of EPT. (#3505)
2.3.0
Changes of Note
GDAL version 3 is now required. (#3428)
readers.tiledb now defaults to unordered reads. (#3267)
readers.tiledb now supports Hilbert ordering. (#3345)
writers.pcd now writes 32-bit floating point for X, Y and Z by
default. (#3286)
The GDAL error handler is redirected to its destination when PDAL
logging stops. (#3244)
New Command
Added pdal eval to print a classification report from two input
point clouds. (#3346)
Added pdal chamfer to calculate the chamfer distance, a metric used
to quantify the similarity of two point clouds by evaluating the mean
square distance of nearest neighbor correspondences between clouds.
New Stages
filters.gpstimeconvert allows conversion between the various GPS
time standards.
filters.teaser uses the truncated least squares estimation and
semidefinite relaxation (TEASER) algorithm to create a rigid
transformation between two datasets.
readers.draco reads the Draco format.
writers.draco writes the Draco format.
filters.zsmooth sets a dimension to a value determined by nearby
points. (#3408)
Removed Stages
readers.oci
writers.oci
Enhancements
pdal pipeline and pdal translate now support a --dims option that
allows the stored dimensions to be easily controlled. (#3310)
readers.las now reports and terminates on some previously undetected
LAS file errors. (#3226)
Added override_srs and default_srs options to readers.gdal to allow
a raster with only NODATA to have an SRS. (#3271)
Support was added for MSVC 2019. (#3292)
Added text output of GeoTIFF keys to metadata when reading LAS
data. (#3299)
Added programmatic support to merge summary statistics. (#3321)
Extra dimension names in a LAS file containing characters deemed
illegal by PDAL are now converted by default to legal PDAL dimension
names. (#3325)
The sample filter is now streamable. (#3275)
Added the --error_on_failure option to filters.reprojection to allow
the program to terminate if a projection operation fails. (#3316)
Added the --start option to readers.las to allow skipping some number
of points. (#3313)
Set the `ACCEPT_ENCODING' curl option to enable automatic
decompression of HTTP replies.
Improve error messages for LAS where a specified point format is
not permitted. (#3324)
Add the --where option to all writers. (#3319)
Added a --nosrs option to readers.las to avoid reading the SRS
information. (#3441)
Improved performance of readers.ept in stream mode. (#3331)
Among various bug fixes, these are the changes since 2.2.0:
2.5.6
bug fixes
2.5.5
bug fixes
2.5.4
bug fixes
2.5.3
bug fixes
2.5.2
Enhancements
Provided allow_empty option to readers.gdal #3984
2.5.1
Enhancements
Optional debug in filters.csf to improve performance #3952 (thanks
@n4z4m3!)
Connection classes for readers.copc and readers.ept consolidated
(#3962)
2.5.0
Changes of Note
TileDB 2.3 now required for TileDB read/write support (#3722)
readers.fbx and readers.mrsid have been removed (#3841)
Make PDAL Locale agnostic (#3873) Thanks @jjimenezshaw!
Non-public symbols are now hidden on unix (#3931) Thanks @abellgithub!
PipelineExecutor class is now deprecated (#3937)
New Stages
readers.ptx (Thanks @dbrookes96!) supports reading the PTX
format(#3718)
writers.fbi and readers.fbi supports TerraSolid binary format(#3822)
(Thanks @alavenant!)
filters.trajectory estimates trajectory for certain data
configurations (#3743)
filters.geomdistance computes the (2D) distance of points to a given
geometry (#3891)
readers.stac dereferences STAC Catalogs to read point cloud data
(#3915)
filters.expression uses the same syntax as where to filter data
(#3930)
Enhancements
boundary_json GeoJSON added to pdal info output (#3750)
Sort COPC output by GPSTime if available (#3747)
filters.zsmooth enabled by default (#3785)
update googletest to 1.12.1 by in (#3917)
Support GDAL 64bit integer types if they are defined (#3795)
PROJJSON output now added to pdal info output (#3780)
QuickInfo now supports adding Metadata (#3894)
stage-n-push support for writers.copc (#3790)
pdal translate will not overwrite data by default (#3794)
'bounds' option to limit filters.overlay usage (#3815)
wmain usage of pdal comand for wide filename character support on
Windows (#3824)
binmode added to writers.gdal to count only points inside pixels
(#3840)
attr_dims and ogr_options options to writers.ogr (#3837) Thanks
@rcoup!
Add metadata to readers.las QuickInfo (#3897)
writers.copc.threads option (#3910)
Support spaces in dimension names (#3907)
writers.copc.a_srs option (#3908)
readers.copc outputs copc_info metadata on read (#3936)
2.4.3
Changes of Note
A significant memory leak in LAZ decompression was fixed #3814
PDAL's website is migrating to @readthedocs Thanks @j9ac9k! #3782
Enhancements
writers.copc remote file writing was added #3819
filters.overlay bounds option added #3815
laz-perf vendored code updated to 3.1.0 release #3821
Arbiter credentials now support profiles #3792
2.4.2
Changes of Note
None
Enhancements
#3769 workshop documentation updates (Thanks @j9ac9k!)
2.4.1
Changes of Note
writers.copc now sorts chunks by GPStime, allowing better compression.
Various warnings for newer compilers have been eliminated.
Enhancements
Errors from the geotiff library are now directed to the console
(standard error).
readers.bpf now adds a count of the number of points to metadata.
The pdal info command now always writes a GeoJSON metadata entry of
the area boundary called boundary_json.
2.4.0
Changes of Note
A compiler that supports C++17 is now required to build PDAL or
include PDAL headers in your code.
The PDAL_STATIC_BUILD cmake option has been removed. We do not
support building PDAL as a static library, though it may work.
The behavior of readers.ept when specifying both bounds and polygon
options has changed such that a point must pass both the filters
independently in order to be accepted. (#3506)
readers.ept will now ignore the spatial reference on a clip region
if the point source has no spatial reference. This behavior is
consistent with filters.crop. (#3580)
readers.las and writers.las no longer support the laszip library. Both
stages now use the lazperf library, which is embedded into the PDAL
library. The compression option is still accepted in readers.las, but
is ignored. The compression option on writers.las still accepts the
LASZIP and LAZPERF , but those values are treated the same as TRUE.
PDAL now builds on MinGW, though future support depends on community
contributions.
Source code supporting las and ept has been moved to a private
namespace.
New Stages
readers.copc and writers.copc have been added to support reading
and writing of COPC files.
readers.smrmsg was added to read from post-processed MMS accuracy
files to be used with SBET data.
Enhancements
The performance of filters.litree has been improved. (#3518)
Support for time query/storage in readers.tiledb and writers.tiledb
has been added. (#3495)
Added various remote access support (AWS Fargate, AWS session token
support, Azure SAS token support). (#3496)
An error is now reported when reading a pipeline with multiple
leaf nodes.
Support for beam direction and origin in readers.rxp has been
added. (#3565)
Add a cmake macro PDAL_CREATE_PLUGIN that may simplify the creation
of some PDAL plugin stages. (#3588)
writers.null is now streamable. (#3591)
Added support for multiple output files in writers.ply (#3617 -
Thanks @longhuan2018)
filters.csf now permits selective output of debugging/analysis
files. (#3488)
Comments in JSON input files (pipelines) are now supported. (#3670)
Added support in writers.las for creating VLRs from metadata. (#3683)
Added query support origin query in version 1.1 of EPT. (#3505)
2.3.0
Changes of Note
GDAL version 3 is now required. (#3428)
readers.tiledb now defaults to unordered reads. (#3267)
readers.tiledb now supports Hilbert ordering. (#3345)
writers.pcd now writes 32-bit floating point for X, Y and Z by
default. (#3286)
The GDAL error handler is redirected to its destination when PDAL
logging stops. (#3244)
New Command
Added pdal eval to print a classification report from two input
point clouds. (#3346)
Added pdal chamfer to calculate the chamfer distance, a metric used
to quantify the similarity of two point clouds by evaluating the mean
square distance of nearest neighbor correspondences between clouds.
New Stages
filters.gpstimeconvert allows conversion between the various GPS
time standards.
filters.teaser uses the truncated least squares estimation and
semidefinite relaxation (TEASER) algorithm to create a rigid
transformation between two datasets.
readers.draco reads the Draco format.
writers.draco writes the Draco format.
filters.zsmooth sets a dimension to a value determined by nearby
points. (#3408)
Removed Stages
readers.oci
writers.oci
Enhancements
pdal pipeline and pdal translate now support a --dims option that
allows the stored dimensions to be easily controlled. (#3310)
readers.las now reports and terminates on some previously undetected
LAS file errors. (#3226)
Added override_srs and default_srs options to readers.gdal to allow
a raster with only NODATA to have an SRS. (#3271)
Support was added for MSVC 2019. (#3292)
Added text output of GeoTIFF keys to metadata when reading LAS
data. (#3299)
Added programmatic support to merge summary statistics. (#3321)
Extra dimension names in a LAS file containing characters deemed
illegal by PDAL are now converted by default to legal PDAL dimension
names. (#3325)
The sample filter is now streamable. (#3275)
Added the --error_on_failure option to filters.reprojection to allow
the program to terminate if a projection operation fails. (#3316)
Added the --start option to readers.las to allow skipping some number
of points. (#3313)
Set the `ACCEPT_ENCODING' curl option to enable automatic
decompression of HTTP replies.
Improve error messages for LAS where a specified point format is
not permitted. (#3324)
Add the --where option to all writers. (#3319)
Added a --nosrs option to readers.las to avoid reading the SRS
information. (#3441)
Improved performance of readers.ept in stream mode. (#3331)
MAIN commitmail json YAML
textproc/libxml2, textproc/py-libxml2: fix dependencies and PKGREVISION
Make sure the fixed build of libxml2 with the deprecated symbols is pulled
in.
Make sure the fixed build of libxml2 with the deprecated symbols is pulled
in.
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devel/hdf5: rename unsafe-threads to hdf5-unsafe-threads and document it
MAIN commitmail json YAML
devel/hdf5: adding unsafe-threads option
This is an option certain scientific users request for building their code.
They explicitly need the unsupported configuration, that somehow seems to
work for them.
This is an option certain scientific users request for building their code.
They explicitly need the unsupported configuration, that somehow seems to
work for them.
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pkg-vulnerabilities: deactivate one old hdf5 issue
Those fuzzed POCs from 5 years ago trigger this in hdf5 since some time:
h5dump error: internal error (file h5dump.c:line 1471)
Those fuzzed POCs from 5 years ago trigger this in hdf5 since some time:
h5dump error: internal error (file h5dump.c:line 1471)
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biology/libpll: add bl3
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doc: Updated biology/libpll to 0.3.2
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pkgsrc/biology/libpll/DESCR@1.1
/
diff
pkgsrc/biology/libpll/Makefile@1.1 / diff
pkgsrc/biology/libpll/PLIST@1.1 / diff
pkgsrc/biology/libpll/distinfo@1.1 / diff
pkgsrc/biology/libpll/patches/patch-configure@1.1 / diff
pkgsrc/biology/libpll/patches/patch-configure.ac@1.1 / diff
pkgsrc/biology/libpll/Makefile@1.1 / diff
pkgsrc/biology/libpll/PLIST@1.1 / diff
pkgsrc/biology/libpll/distinfo@1.1 / diff
pkgsrc/biology/libpll/patches/patch-configure@1.1 / diff
pkgsrc/biology/libpll/patches/patch-configure.ac@1.1 / diff
biology/libpll: added package for PLL phylogenetic analysis
The aim of this project is to implement a versatile high-performance
software library for phylogenetic analysis. The library should serve
as a lower-level interface of PLL (Flouri et al. 2015) and should
have the following properties:
open source code with an appropriate open source license.
64-bit multi-threaded design that handles very large datasets.
easy to use and well-documented.
SIMD implementations of time-consuming parts.
as fast or faster likelihood computations than RAxML (Stamatakis 2014).
fast implementation of the site repeats algorithm (Kobert 2017).
functions for tree visualization.
bindings for Python.
generic and clean design.
Linux, Mac, and Microsoft Windows compatibility.
The aim of this project is to implement a versatile high-performance
software library for phylogenetic analysis. The library should serve
as a lower-level interface of PLL (Flouri et al. 2015) and should
have the following properties:
open source code with an appropriate open source license.
64-bit multi-threaded design that handles very large datasets.
easy to use and well-documented.
SIMD implementations of time-consuming parts.
as fast or faster likelihood computations than RAxML (Stamatakis 2014).
fast implementation of the site repeats algorithm (Kobert 2017).
functions for tree visualization.
bindings for Python.
generic and clean design.
Linux, Mac, and Microsoft Windows compatibility.
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graphics/tiff: explicitly use libdeflate
Otherwise it is found and used in a host GNU/Linux distro, messing up dependents
which lack it in buildlinks.
Otherwise it is found and used in a host GNU/Linux distro, messing up dependents
which lack it in buildlinks.
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graphics/libtiff: use pkg-config to properly detect deps, remove --without-x
The --without-x is defunct. The configure script wants to use pkg-config, it
should be able to.
The --without-x is defunct. The configure script wants to use pkg-config, it
should be able to.
MAIN commitmail json YAML
textproc/libxml2: actually activate the added args from last commit
Intermediate testing caused the commmit to contain the wrong file.
Intermediate testing caused the commmit to contain the wrong file.
MAIN commitmail json YAML
textproc/libxml2: add --with-ftp --with-legacy to fix depdendents
This version of libxml2 drops things other packages depend on, namely
these both cause symbols being missed by py-libxml2 (xmlNanoFTPProxy or
xmlParseQuotedString, for example).
This version of libxml2 drops things other packages depend on, namely
these both cause symbols being missed by py-libxml2 (xmlNanoFTPProxy or
xmlParseQuotedString, for example).
MAIN commitmail json YAML
py-scipy: Fix BLAS usage, using WHEEL_ARGS
See py-numpy. Also drop the bad fixed openblas dependency.
See py-numpy. Also drop the bad fixed openblas dependency.
MAIN commitmail json YAML
py-numpy: fix BLAS choice
This is now properly using WHEEL_ARGS to impose our BLAS choice.
Supporting Accelerate Framework on Darwin means extra work (some shim
pkgconfig file via the proposed blaswrap package).
This is now properly using WHEEL_ARGS to impose our BLAS choice.
Supporting Accelerate Framework on Darwin means extra work (some shim
pkgconfig file via the proposed blaswrap package).
MAIN commitmail json YAML
lang/python/wheel.mk: add WHEEL_ARGS to influence build
This allows passing things like -Csetup-args=-Dfoo=bar which may be
needed for build configuration.
This allows passing things like -Csetup-args=-Dfoo=bar which may be
needed for build configuration.
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pkgsrc/math/openblas/Makefile@1.8
/
diff
pkgsrc/math/openblas/distinfo@1.10 / diff
pkgsrc/math/openblas/patches/patch-Makefile.install@1.7 / diff
pkgsrc/math/openblas64/Makefile@1.3 / diff
pkgsrc/math/openblas64_openmp/Makefile@1.3 / diff
pkgsrc/math/openblas64_pthread/Makefile@1.3 / diff
pkgsrc/math/openblas_openmp/Makefile@1.6 / diff
pkgsrc/math/openblas_pthread/Makefile@1.6 / diff
pkgsrc/math/openblas/distinfo@1.10 / diff
pkgsrc/math/openblas/patches/patch-Makefile.install@1.7 / diff
pkgsrc/math/openblas64/Makefile@1.3 / diff
pkgsrc/math/openblas64_openmp/Makefile@1.3 / diff
pkgsrc/math/openblas64_pthread/Makefile@1.3 / diff
pkgsrc/math/openblas_openmp/Makefile@1.6 / diff
pkgsrc/math/openblas_pthread/Makefile@1.6 / diff
math/openblas*: more portable sed for .pc modification
The old path added \b, which is not POSIX BRE. [:space:] works better with
differing seds. It removes more than \b, but in our installs, the following
suffix variable is emtpy, anyway.
The old path added \b, which is not POSIX BRE. [:space:] works better with
differing seds. It removes more than \b, but in our installs, the following
suffix variable is emtpy, anyway.
MAIN commitmail json YAML
doc: Updated math/openblas to 0.3.24nb1
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pkgsrc/math/openblas/Makefile@1.7
/
diff
pkgsrc/math/openblas/distinfo@1.9 / diff
pkgsrc/math/openblas/patches/patch-Makefile.install@1.6 / diff
pkgsrc/math/openblas64/Makefile@1.2 / diff
pkgsrc/math/openblas64_openmp/Makefile@1.2 / diff
pkgsrc/math/openblas64_pthread/Makefile@1.2 / diff
pkgsrc/math/openblas_openmp/Makefile@1.5 / diff
pkgsrc/math/openblas_pthread/Makefile@1.5 / diff
pkgsrc/math/openblas/distinfo@1.9 / diff
pkgsrc/math/openblas/patches/patch-Makefile.install@1.6 / diff
pkgsrc/math/openblas64/Makefile@1.2 / diff
pkgsrc/math/openblas64_openmp/Makefile@1.2 / diff
pkgsrc/math/openblas64_pthread/Makefile@1.2 / diff
pkgsrc/math/openblas_openmp/Makefile@1.5 / diff
pkgsrc/math/openblas_pthread/Makefile@1.5 / diff
math/openblas: Fix pkg-config file for current version.
The last update broke the library name in the installed pkg-config file
for the openblas variants. Fixing this.
Our type of library naming should be pushed upstream, or adapted to
some other scheme.
The last update broke the library name in the installed pkg-config file
for the openblas variants. Fixing this.
Our type of library naming should be pushed upstream, or adapted to
some other scheme.
MAIN commitmail json YAML
audio/aubio: control docs creation, change maintainer
On a Linux system with doxygen present, unwanted html documentation could be created,
also man generation needs explicit dependency.
The old maintainer asked to be removed, so it is pkgsrc-users for now. Thanks
for your work so far!
On a Linux system with doxygen present, unwanted html documentation could be created,
also man generation needs explicit dependency.
The old maintainer asked to be removed, so it is pkgsrc-users for now. Thanks
for your work so far!
MAIN commitmail json YAML
pkgsrc/graphics/vtk/Makefile@1.36
/
diff
pkgsrc/graphics/vtk/PLIST@1.8 / diff
pkgsrc/graphics/vtk/buildlink3.mk@1.16 / diff
pkgsrc/graphics/vtk/distinfo@1.14 / diff
pkgsrc/graphics/vtk/PLIST@1.8 / diff
pkgsrc/graphics/vtk/buildlink3.mk@1.16 / diff
pkgsrc/graphics/vtk/distinfo@1.14 / diff
graphics/vtk: update to 9.2.6
I am not able to find a changes list. Sorry. It's just a newer version of this
behemoth that dependents need.
I am not able to find a changes list. Sorry. It's just a newer version of this
behemoth that dependents need.
MAIN commitmail json YAML
doc: Updated print/libharu to 2.4.3
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pkgsrc/print/libharu/Makefile@1.3
/
diff
pkgsrc/print/libharu/PLIST@1.2 / diff
pkgsrc/print/libharu/distinfo@1.4 / diff
pkgsrc/print/libharu/PLIST@1.2 / diff
pkgsrc/print/libharu/distinfo@1.4 / diff
print/libharu: update to 2.4.3
(also taking over maintainership after confirming with Patrick)
v.2.4.3
Add static hpdf_version.h header by @vszakats in #241
hpdf_version.h included again by hpdf.h #241 #246
File attachment issue resolved @hvanbrug #159
Renamed *_LIBZ defines to _*ZLIB, thanks to @karstenBriksoft #249, enables compression of PDF files again.
v.2.4.2
Reinstated hpdf_version.h #237 #240
v.2.4.1
Fixed library name #236 from @jschueller
Set correct version number #237 pointed out by @xantares
v.2.4.0
Add support for free-form triangle shading objects. by @allisonvacanti in #157
Fix config constant to match use in hpdf_mmgr.c by @bvirlet in #167
Improve small number writing in HPDF_FToA. by @allisonvacanti in #187
Fix missing /CapHeight key in font definition by @yabaud in #138
Change HPDF_Page_CreateXObjectFromImage zoom parameter type to HPDF… by @extensia in #114
Fix another case of png files with background mask save uncompressed by @igor-niv in #221
Avoid issue with libtiff duplicate symbols by @bvirlet in #168
Reajust bit_depth of png image after striping depth from 16 to 8. by @joelhecht in #125
Fixed typo in Japanese font name: Mincyo -> Mincho by @qtamaki in #80
Fix various typos by @luzpaz in #226
hpdf.h: add missing HPDF_Boolean typedef by @mathstuf in #189
Moved to a CMake only build environment.
Fix bad unicode in comment by @gix in #229
Fix various typos by @luzpaz in #230
(also taking over maintainership after confirming with Patrick)
v.2.4.3
Add static hpdf_version.h header by @vszakats in #241
hpdf_version.h included again by hpdf.h #241 #246
File attachment issue resolved @hvanbrug #159
Renamed *_LIBZ defines to _*ZLIB, thanks to @karstenBriksoft #249, enables compression of PDF files again.
v.2.4.2
Reinstated hpdf_version.h #237 #240
v.2.4.1
Fixed library name #236 from @jschueller
Set correct version number #237 pointed out by @xantares
v.2.4.0
Add support for free-form triangle shading objects. by @allisonvacanti in #157
Fix config constant to match use in hpdf_mmgr.c by @bvirlet in #167
Improve small number writing in HPDF_FToA. by @allisonvacanti in #187
Fix missing /CapHeight key in font definition by @yabaud in #138
Change HPDF_Page_CreateXObjectFromImage zoom parameter type to HPDF… by @extensia in #114
Fix another case of png files with background mask save uncompressed by @igor-niv in #221
Avoid issue with libtiff duplicate symbols by @bvirlet in #168
Reajust bit_depth of png image after striping depth from 16 to 8. by @joelhecht in #125
Fixed typo in Japanese font name: Mincyo -> Mincho by @qtamaki in #80
Fix various typos by @luzpaz in #226
hpdf.h: add missing HPDF_Boolean typedef by @mathstuf in #189
Moved to a CMake only build environment.
Fix bad unicode in comment by @gix in #229
Fix various typos by @luzpaz in #230
MAIN commitmail json YAML
fix my name
MAIN commitmail json YAML
doc: Updated science/cgnslib to 4.4.0
MAIN commitmail json YAML
pkgsrc/science/Makefile@1.2
/
diff
pkgsrc/science/cgnslib/DESCR@1.1 / diff
pkgsrc/science/cgnslib/Makefile@1.1 / diff
pkgsrc/science/cgnslib/PLIST@1.1 / diff
pkgsrc/science/cgnslib/buildlink3.mk@1.1 / diff
pkgsrc/science/cgnslib/distinfo@1.1 / diff
pkgsrc/science/cgnslib/DESCR@1.1 / diff
pkgsrc/science/cgnslib/Makefile@1.1 / diff
pkgsrc/science/cgnslib/PLIST@1.1 / diff
pkgsrc/science/cgnslib/buildlink3.mk@1.1 / diff
pkgsrc/science/cgnslib/distinfo@1.1 / diff
science/cgnslib: import new package vom wip
The CFD General Notation System (CGNS) provides a standard for
recording and recovering computer data associated with the
numerical solution of fluid dynamics equations.
The CFD General Notation System (CGNS) provides a standard for
recording and recovering computer data associated with the
numerical solution of fluid dynamics equations.
MAIN commitmail json YAML
pkgsrc/mk/tools/defaults.mk@1.64
/
diff
pkgsrc/mk/tools/replace.mk@1.298 / diff
pkgsrc/mk/tools/tools.Linux.mk@1.69 / diff
pkgsrc/mk/tools/tools.NetBSD.mk@1.74 / diff
pkgsrc/mk/tools/replace.mk@1.298 / diff
pkgsrc/mk/tools/tools.Linux.mk@1.69 / diff
pkgsrc/mk/tools/tools.NetBSD.mk@1.74 / diff
mk/tools: add mandoc as tool
Only nroff was handled as tool dependency for now, coming from the same
source. Now the mandoc command is handled, too (libfido2 needs it, the
change staged in wip right now).
Platform-provided mandoc is only checked on NetBSD and Linux right now.
Only nroff was handled as tool dependency for now, coming from the same
source. Now the mandoc command is handled, too (libfido2 needs it, the
change staged in wip right now).
Platform-provided mandoc is only checked on NetBSD and Linux right now.
MAIN commitmail json YAML
doc: Updated audio/mpg123 to 1.31.3
MAIN commitmail json YAML
mpg123: bump to 1.31.3
upstream changes:
1.31.3
------
- build:
-- Fix --disable-8bit.
-- Fall back to generic decoder if no yasm for MSVC (bug 346).
-- Fix some pedantic compiler warnings, avoid breaking libtool wrappers.
- mpg123:
-- Fix verbose position printout for new resampling outside libmpg123 (where
output rate differs from decoding rate).
- libsyn123:
-- Fix reconfiguration of resampler to avoid double free when reducing
decimator stages to zero (bug 350). Thanks to Youngseok Choi for reporting
this fuzzed issue.
upstream changes:
1.31.3
------
- build:
-- Fix --disable-8bit.
-- Fall back to generic decoder if no yasm for MSVC (bug 346).
-- Fix some pedantic compiler warnings, avoid breaking libtool wrappers.
- mpg123:
-- Fix verbose position printout for new resampling outside libmpg123 (where
output rate differs from decoding rate).
- libsyn123:
-- Fix reconfiguration of resampler to avoid double free when reducing
decimator stages to zero (bug 350). Thanks to Youngseok Choi for reporting
this fuzzed issue.
MAIN commitmail json YAML
pkgsrc/doc/CHANGES-2022@1.5630
/
diff
pkgsrc/mail/claws-mail/Makefile.vers@1.28 / diff
pkgsrc/mail/claws-mail/PLIST@1.31 / diff
pkgsrc/mail/claws-mail/distinfo@1.39 / diff
pkgsrc/mail/claws-mail/patches/patch-src_plugins_pgpcore_sgpgme.c deleted
pkgsrc/mail/claws-mail/Makefile.vers@1.28 / diff
pkgsrc/mail/claws-mail/PLIST@1.31 / diff
pkgsrc/mail/claws-mail/distinfo@1.39 / diff
pkgsrc/mail/claws-mail/patches/patch-src_plugins_pgpcore_sgpgme.c deleted
mail/claws-mail: update to 4.1.1
* 4.1.1 / 3.19.1
----------------
* Marked messages in the Message List can now be displayed with bold
text by setting the hidden preference "bold_marked".
* The confirmation dialogue when saving all the attachments of a
message can now be disabled.
* The Message List tooltip for the From column now shows name and
address.
* OAuth2: various fixes and improvements.
* The user manuals have been updated.
* Updated translations: Brazilian Portuguese, Catalan, Czech, Dutch,
French, Polish, Russian, Slovak, Spanish, Swedish, Traditional
Chinese, Turkish.
* Build system: GLib version 2.50 or greater is required; autoconf
version 2.69 or greater is required; pkgconfig support for GPGME
and libgpg-error has been added; GnuTLS is required for OAuth2;
OAuth2 support can be removed with --disable-oauth2.
* bug fixes:
• bug 4547, '--enable-tests makes compilation fail'
• bug 4583, 'Compose window 'Discard message' dialog is
displayed even though draft is already saved'
• bug 4584, 'Compose window causing Claws to terminate
unexpectedly'
• bug 4589, 'Edit Group Details panel wording unclear.'
• bug 4615, 'Compilation fails with --disable-gnutls'
• bug 4620, 'German translation of Content-Transfer-Encoding
adds unwanted colon'
• bug 4628, 'typos in the README file'
• bug 4630, 'Fancy loads remote images when remote content
is disabled'
• bug 4636, 'Handle non-ascii characters in server response'
• AddressKeeper plugin: not saving addresses.
• Perl plugin: building with perl v5.35.2 or greater.
• AttRemover plugin: filenames would not be shown and corrupt
the output
• OAuth2: Use the user-configured timeout
• 'save all' dialogues' logic.
• Make custom headers compliant with RFC 2822 § 3.6.
• correctly set modified flag after auto-save
• NNTP account's SMTP server wasn't used
• building with older GLibs
* 4.1.0 / 3.19.0
----------------
* Text zooming in the Message View is now possible, using CTRL+mouse
wheel up/down, CRTL+touchpad two-fingered vertical swiping, or
the Message View's right-click menu.
* GtkColorChooser is now used in the Spell Checking preferences,
Colour Label preferences, and the folder Properties pages.
* 'Default From:' has been added to the Compose page of the folder
Properties. This allows setting an email address which will
override the Account's email address.
* An option has been added to the 'General' page of the folder
Properties, 'Skip folder when searching for unread or new
messages', so that the folder can be skipped when using Go To
next/previous unread/new message.
* 'By Sender' has been added to '/Tools/Create filtering rule/...'
and '/Tools/Create processing rule/...'
* The option 'Run processing rules before marking all messages in a
folder as read or unread' has been added to
'/Configuration/Preferences/Display/Summaries'.
* It is now possible to add a toolbar button to 'Run folder
processing rules'.
* The Actions configuration list now has 'Top' and 'Bottom' buttons.
* In '/Tools/List URLs' it is now possible to CTRL+c or right-click
a list item and 'Copy URL'; copying multiple selections is also
possible.
Phishing URLs are now indicated in red by default. This uses the
colour defined in the hidden preference, log_error_color.
* The method of handling Tags has been improved.
* When using the separate Message View the Enter key will open the
currently selected message in the Message List. So, for example,
if you delete the current message, pressing Enter will open the
next message without having to leave the separate Message View.
* The quicksearch type-ahead keypress delay is now customizable
using a hidden preference ("qs_press_timeout").
* Improvements to the storage of OAuth2 refresh tokens.
* A "View all" button has been added to the Themes preferences page
in order to preview all icons of a theme.
* The term 'master passphrase' has been replaced in the UI with
'primary passphrase'.
* The label 'SSL/TLS' has been replaced with 'TLS' in the UI.
* chmod 0600 is set on log files, history files, saved parts, etc.
* "Keyword Warner" plugin has been added. This shows a warning when
sending or queueing a message and a reference to one or more
user-defined keywords are found in the message text.
* Adding a new RSSyl feed or subscribing to a Webcal will
automatically suggest using any suitable URI found on the
clipboard.
* The user manuals have been updated.
* Updated translations: Brazilian Portuguese, British English,
Catalan, Czech, French, Indonesian, Polish, Romanian, Russian,
Slovak, Spanish, Turkish.
* bug fixes:
o bug 4312, 'litehtml plugin loops (hangup)'
o bug 4346, 'Error: Certificate is for invalid2.invalid, but
connection is to imap.gmail.com'
o bug 4442, 'vcalendar segfault if in invitation email and
switch to another folder'
o bug 4495, 'Improve text strings for OAuth2'
o bug 4496, 'Fancy crashes when opening an email'
o bug 4511, 'Uses deprecated ghostscript operator'
o bug 4513, 'msg window too small in 3 column layout'
o bug 4517, 'Thread safety issues in signature checking code'
o bug 4524, 'Problems exiting/closing Claws Mail'
o bug 4534, 'Address book causing claws to terminate
unexpectedly'
o bug 4535, 'Setting msgview_date_format=1 does not work'
o bug 4536, 'Tab for address selects second entry'
o bug 4556, 'Filesize in kilobytes versus kibibytes'
o bug 4577, 'Fancy plugin with GTK3 seems to ignore content
encoding'
o when using 'hide_timezone' use UTC when generating
MessageID
o non-translation of some button labels
o the initial position of the (X-)Face image
o return receipts from accounts without a name
o folderview pixmaps not being updated after icon theme
change until restart
o spell checker underlining when black is chosen
o text on various buttons
o scrolling in a message's attachments bar (scrolling left or
right were scrolling down).
o scrolling not working when GTK smooth scroll is set
o scroll to next/prev page in pdf_viewer
o build error with -Werror=format-security
o invalid crypto engine (gpgme_op_verify failed)
o vCalendar tooltip in Day View showed the wrong month.
o View Log button
o when closing Compose window dialogue requesting choice from
user is not shown and some options are lost in drafted copy
o weird logic with the 'Edit filter action' dialog
o resource leaks; memory corruption
* 4.1.1 / 3.19.1
----------------
* Marked messages in the Message List can now be displayed with bold
text by setting the hidden preference "bold_marked".
* The confirmation dialogue when saving all the attachments of a
message can now be disabled.
* The Message List tooltip for the From column now shows name and
address.
* OAuth2: various fixes and improvements.
* The user manuals have been updated.
* Updated translations: Brazilian Portuguese, Catalan, Czech, Dutch,
French, Polish, Russian, Slovak, Spanish, Swedish, Traditional
Chinese, Turkish.
* Build system: GLib version 2.50 or greater is required; autoconf
version 2.69 or greater is required; pkgconfig support for GPGME
and libgpg-error has been added; GnuTLS is required for OAuth2;
OAuth2 support can be removed with --disable-oauth2.
* bug fixes:
• bug 4547, '--enable-tests makes compilation fail'
• bug 4583, 'Compose window 'Discard message' dialog is
displayed even though draft is already saved'
• bug 4584, 'Compose window causing Claws to terminate
unexpectedly'
• bug 4589, 'Edit Group Details panel wording unclear.'
• bug 4615, 'Compilation fails with --disable-gnutls'
• bug 4620, 'German translation of Content-Transfer-Encoding
adds unwanted colon'
• bug 4628, 'typos in the README file'
• bug 4630, 'Fancy loads remote images when remote content
is disabled'
• bug 4636, 'Handle non-ascii characters in server response'
• AddressKeeper plugin: not saving addresses.
• Perl plugin: building with perl v5.35.2 or greater.
• AttRemover plugin: filenames would not be shown and corrupt
the output
• OAuth2: Use the user-configured timeout
• 'save all' dialogues' logic.
• Make custom headers compliant with RFC 2822 § 3.6.
• correctly set modified flag after auto-save
• NNTP account's SMTP server wasn't used
• building with older GLibs
* 4.1.0 / 3.19.0
----------------
* Text zooming in the Message View is now possible, using CTRL+mouse
wheel up/down, CRTL+touchpad two-fingered vertical swiping, or
the Message View's right-click menu.
* GtkColorChooser is now used in the Spell Checking preferences,
Colour Label preferences, and the folder Properties pages.
* 'Default From:' has been added to the Compose page of the folder
Properties. This allows setting an email address which will
override the Account's email address.
* An option has been added to the 'General' page of the folder
Properties, 'Skip folder when searching for unread or new
messages', so that the folder can be skipped when using Go To
next/previous unread/new message.
* 'By Sender' has been added to '/Tools/Create filtering rule/...'
and '/Tools/Create processing rule/...'
* The option 'Run processing rules before marking all messages in a
folder as read or unread' has been added to
'/Configuration/Preferences/Display/Summaries'.
* It is now possible to add a toolbar button to 'Run folder
processing rules'.
* The Actions configuration list now has 'Top' and 'Bottom' buttons.
* In '/Tools/List URLs' it is now possible to CTRL+c or right-click
a list item and 'Copy URL'; copying multiple selections is also
possible.
Phishing URLs are now indicated in red by default. This uses the
colour defined in the hidden preference, log_error_color.
* The method of handling Tags has been improved.
* When using the separate Message View the Enter key will open the
currently selected message in the Message List. So, for example,
if you delete the current message, pressing Enter will open the
next message without having to leave the separate Message View.
* The quicksearch type-ahead keypress delay is now customizable
using a hidden preference ("qs_press_timeout").
* Improvements to the storage of OAuth2 refresh tokens.
* A "View all" button has been added to the Themes preferences page
in order to preview all icons of a theme.
* The term 'master passphrase' has been replaced in the UI with
'primary passphrase'.
* The label 'SSL/TLS' has been replaced with 'TLS' in the UI.
* chmod 0600 is set on log files, history files, saved parts, etc.
* "Keyword Warner" plugin has been added. This shows a warning when
sending or queueing a message and a reference to one or more
user-defined keywords are found in the message text.
* Adding a new RSSyl feed or subscribing to a Webcal will
automatically suggest using any suitable URI found on the
clipboard.
* The user manuals have been updated.
* Updated translations: Brazilian Portuguese, British English,
Catalan, Czech, French, Indonesian, Polish, Romanian, Russian,
Slovak, Spanish, Turkish.
* bug fixes:
o bug 4312, 'litehtml plugin loops (hangup)'
o bug 4346, 'Error: Certificate is for invalid2.invalid, but
connection is to imap.gmail.com'
o bug 4442, 'vcalendar segfault if in invitation email and
switch to another folder'
o bug 4495, 'Improve text strings for OAuth2'
o bug 4496, 'Fancy crashes when opening an email'
o bug 4511, 'Uses deprecated ghostscript operator'
o bug 4513, 'msg window too small in 3 column layout'
o bug 4517, 'Thread safety issues in signature checking code'
o bug 4524, 'Problems exiting/closing Claws Mail'
o bug 4534, 'Address book causing claws to terminate
unexpectedly'
o bug 4535, 'Setting msgview_date_format=1 does not work'
o bug 4536, 'Tab for address selects second entry'
o bug 4556, 'Filesize in kilobytes versus kibibytes'
o bug 4577, 'Fancy plugin with GTK3 seems to ignore content
encoding'
o when using 'hide_timezone' use UTC when generating
MessageID
o non-translation of some button labels
o the initial position of the (X-)Face image
o return receipts from accounts without a name
o folderview pixmaps not being updated after icon theme
change until restart
o spell checker underlining when black is chosen
o text on various buttons
o scrolling in a message's attachments bar (scrolling left or
right were scrolling down).
o scrolling not working when GTK smooth scroll is set
o scroll to next/prev page in pdf_viewer
o build error with -Werror=format-security
o invalid crypto engine (gpgme_op_verify failed)
o vCalendar tooltip in Day View showed the wrong month.
o View Log button
o when closing Compose window dialogue requesting choice from
user is not shown and some options are lost in drafted copy
o weird logic with the 'Edit filter action' dialog
o resource leaks; memory corruption
MAIN commitmail json YAML
aubio: explicit doxygen dependency
MAIN commitmail json YAML
blas.bl3: Fix BLAS_INCLUDES for openblas_pthread with 32 bit (default) indices
MAIN commitmail json YAML
parallel/openmpi: fix dependent build with Fortran modules
MAIN commitmail json YAML
parallel/mpi-ch: fix dependent build with Fortran modules
MAIN commitmail json YAML
doc: Updated math/py-astropy to 5.0.4
MAIN commitmail json YAML
mk/blas.bl3: Define *_PC variables for pkg-config use
This enables pointing builds to pkg-config instead of plain compiler/linker flags.
Future CMake integration profits from that.
This enables pointing builds to pkg-config instead of plain compiler/linker flags.
Future CMake integration profits from that.
MAIN commitmail json YAML
doc: Updated math/py-asdf to 2.11.0
MAIN commitmail json YAML
pkgsrc/math/py-asdf/Makefile@1.8
/
diff
pkgsrc/math/py-asdf/PLIST@1.4 / diff
pkgsrc/math/py-asdf/distinfo@1.6 / diff
pkgsrc/math/py-asdf/PLIST@1.4 / diff
pkgsrc/math/py-asdf/distinfo@1.6 / diff
devel/py-asdf: import 2.11.0 from wip
2.11.0 (2022-03-15)
-------------------
- Update minimum jsonschema version to 4.0.1. [#1105]
2.10.1 (2022-03-02)
-------------------
- Bugfix for circular build dependency for asdf. [#1094]
- Fix small bug with handling multiple schema uris per tag. [#1095]
2.10.0 (2022-02-17)
-------------------
- Replace asdf-standard submodule with pypi package. [#1079]
2.9.2 (2022-02-07)
------------------
- Fix deprecation warnings stemming from the release of pytest 7.0.0. [#1075]
- Fix bug in pytest plugin when schemas are not in a directory named "schemas". [#1076]
2.9.1 (2022-02-03)
------------------
- Fix typo in testing module ``__init__.py`` name. [#1071]
2.9.0 (2022-02-02)
------------------
- Added the capability for tag classes to provide an interface
to asdf info functionality to obtain information about the
class attributes rather than appear as an opaque class object.
[#1052 #1055]
- Fix tag listing when extension is not fully implemented. [#1034]
- Drop support for Python 3.6. [#1054]
- Adjustments to compression plugin tests and documentation. [#1053]
- Update setup.py to raise error if "git submodule update --init" has
not been run. [#1057]
- Add ability for tags to correspond to multiple schema_uri, with an
implied allOf among the schema_uris. [#1058, #1069]
- Add the URL of the file being parsed to ``SerializationContext``. [#1065]
- Add ``asdf.testing.helpers`` module with simplified versions of test
helpers previously available in ``asdf.tests.helpers``. [#1067]
2.11.0 (2022-03-15)
-------------------
- Update minimum jsonschema version to 4.0.1. [#1105]
2.10.1 (2022-03-02)
-------------------
- Bugfix for circular build dependency for asdf. [#1094]
- Fix small bug with handling multiple schema uris per tag. [#1095]
2.10.0 (2022-02-17)
-------------------
- Replace asdf-standard submodule with pypi package. [#1079]
2.9.2 (2022-02-07)
------------------
- Fix deprecation warnings stemming from the release of pytest 7.0.0. [#1075]
- Fix bug in pytest plugin when schemas are not in a directory named "schemas". [#1076]
2.9.1 (2022-02-03)
------------------
- Fix typo in testing module ``__init__.py`` name. [#1071]
2.9.0 (2022-02-02)
------------------
- Added the capability for tag classes to provide an interface
to asdf info functionality to obtain information about the
class attributes rather than appear as an opaque class object.
[#1052 #1055]
- Fix tag listing when extension is not fully implemented. [#1034]
- Drop support for Python 3.6. [#1054]
- Adjustments to compression plugin tests and documentation. [#1053]
- Update setup.py to raise error if "git submodule update --init" has
not been run. [#1057]
- Add ability for tags to correspond to multiple schema_uri, with an
implied allOf among the schema_uris. [#1058, #1069]
- Add the URL of the file being parsed to ``SerializationContext``. [#1065]
- Add ``asdf.testing.helpers`` module with simplified versions of test
helpers previously available in ``asdf.tests.helpers``. [#1067]
MAIN commitmail json YAML
textproc/py-jsonschema: another PLIST fix because of licenses/
MAIN commitmail json YAML
devel/py-hatch-vcs: fix PLIST
They changed a directory name.
They changed a directory name.
MAIN commitmail json YAML
doc: Updated math/py-pyerfa to 2.0.0.1
MAIN commitmail json YAML
pkgsrc/math/py-pyerfa/Makefile@1.6
/
diff
pkgsrc/math/py-pyerfa/PLIST@1.2 / diff
pkgsrc/math/py-pyerfa/distinfo@1.4 / diff
pkgsrc/math/py-pyerfa/PLIST@1.2 / diff
pkgsrc/math/py-pyerfa/distinfo@1.4 / diff
math/py-pyerfa: import 2.0.0.1 from wip
2.0.0.1 (2021-11-02)
====================
- The underlying universal functions in ``erfa.ufunc`` now work with an ``out``
argument also if the required output is a structured array. [gh-76]
2.0.0 (2021-05-17)
==================
- Bundled liberfa version update to v2.0.0. This includes new functionality,
and hence pyerfa 2.0.0 cannot run with previous versions of liberfa.
- ``erfa.dt_eraLDBODY`` has been corrected to ensure that the 'pv' entry is
now of type ``erfa.dt_pv``, so that cross-assignments with that dtype work
correctly. [gh-74]
- ``erfa_generator`` now also generates a ``test_ufunc.py`` file that
runs all the C code tests on the ufuncs, thus verifying the code
wrapping worked correctly. As part of that, the ability to give
specific output file names has been removed, as it was not used.
(Note: these changes have no effect on use of PyERFA.) [gh-71]
1.7.3 (2021-04-25)
==================
- Bundled liberfa version update to v1.7.3.
- Fixed a bug that caused the output of ``rx``, ``ry``, and ``rz`` to be
boolean rather than float for some compilers/OS. [gh-72]
1.7.2 (2021-01-25)
==================
- Bundled liberfa version update to v1.7.2.
- The classproperty decorator is now thread-safe
(backport https://github.com/astropy/astropy/pull/11224).
2.0.0.1 (2021-11-02)
====================
- The underlying universal functions in ``erfa.ufunc`` now work with an ``out``
argument also if the required output is a structured array. [gh-76]
2.0.0 (2021-05-17)
==================
- Bundled liberfa version update to v2.0.0. This includes new functionality,
and hence pyerfa 2.0.0 cannot run with previous versions of liberfa.
- ``erfa.dt_eraLDBODY`` has been corrected to ensure that the 'pv' entry is
now of type ``erfa.dt_pv``, so that cross-assignments with that dtype work
correctly. [gh-74]
- ``erfa_generator`` now also generates a ``test_ufunc.py`` file that
runs all the C code tests on the ufuncs, thus verifying the code
wrapping worked correctly. As part of that, the ability to give
specific output file names has been removed, as it was not used.
(Note: these changes have no effect on use of PyERFA.) [gh-71]
1.7.3 (2021-04-25)
==================
- Bundled liberfa version update to v1.7.3.
- Fixed a bug that caused the output of ``rx``, ``ry``, and ``rz`` to be
boolean rather than float for some compilers/OS. [gh-72]
1.7.2 (2021-01-25)
==================
- Bundled liberfa version update to v1.7.2.
- The classproperty decorator is now thread-safe
(backport https://github.com/astropy/astropy/pull/11224).
MAIN commitmail json YAML
doc: Updated devel/py-colorlog to 6.6.0
MAIN commitmail json YAML
pkgsrc/devel/Makefile@1.3785
/
diff
pkgsrc/devel/py-colorlog/DESCR@1.1 / diff
pkgsrc/devel/py-colorlog/Makefile@1.1 / diff
pkgsrc/devel/py-colorlog/PLIST@1.1 / diff
pkgsrc/devel/py-colorlog/distinfo@1.1 / diff
pkgsrc/devel/py-colorlog/DESCR@1.1 / diff
pkgsrc/devel/py-colorlog/Makefile@1.1 / diff
pkgsrc/devel/py-colorlog/PLIST@1.1 / diff
pkgsrc/devel/py-colorlog/distinfo@1.1 / diff
devel/py-colorlog: importing from WIP
A python library that does log formatting with colors.
A python library that does log formatting with colors.
MAIN commitmail json YAML
doc: Updated math/scalapack to 2.2.0
MAIN commitmail json YAML
pkgsrc/math/Makefile@1.550
/
diff
pkgsrc/math/scalapack/DESCR@1.1 / diff
pkgsrc/math/scalapack/Makefile@1.1 / diff
pkgsrc/math/scalapack/PLIST@1.1 / diff
pkgsrc/math/scalapack/buildlink3.mk@1.1 / diff
pkgsrc/math/scalapack/distinfo@1.1 / diff
pkgsrc/math/scalapack/patches/patch-PR67-MPI-linking@1.1 / diff
pkgsrc/math/scalapack/patches/patch-SRC_pdtrord.f@1.1 / diff
pkgsrc/math/scalapack/patches/patch-SRC_pstrord.f@1.1 / diff
pkgsrc/math/scalapack/patches/patch-SRC_pstrsen.f@1.1 / diff
pkgsrc/math/scalapack/patches/patch-scalapack.pc.in@1.1 / diff
pkgsrc/math/scalapack/DESCR@1.1 / diff
pkgsrc/math/scalapack/Makefile@1.1 / diff
pkgsrc/math/scalapack/PLIST@1.1 / diff
pkgsrc/math/scalapack/buildlink3.mk@1.1 / diff
pkgsrc/math/scalapack/distinfo@1.1 / diff
pkgsrc/math/scalapack/patches/patch-PR67-MPI-linking@1.1 / diff
pkgsrc/math/scalapack/patches/patch-SRC_pdtrord.f@1.1 / diff
pkgsrc/math/scalapack/patches/patch-SRC_pstrord.f@1.1 / diff
pkgsrc/math/scalapack/patches/patch-SRC_pstrsen.f@1.1 / diff
pkgsrc/math/scalapack/patches/patch-scalapack.pc.in@1.1 / diff
math/scalapack: import from WIP, parallel LAPACK library
MAIN commitmail json YAML
parallel/openmpi: fix buildlink path from wip
Stupid! Redundant! Sorry.
Stupid! Redundant! Sorry.
MAIN commitmail json YAML
doc: Updated parallel/openmpi to 4.1.4
MAIN commitmail json YAML
pkgsrc/parallel/openmpi/DESCR@1.6
/
diff
pkgsrc/parallel/openmpi/Makefile@1.51 / diff
pkgsrc/parallel/openmpi/PLIST@1.20 / diff
pkgsrc/parallel/openmpi/buildlink3.mk@1.10 / diff
pkgsrc/parallel/openmpi/distinfo@1.23 / diff
pkgsrc/parallel/openmpi/options.mk@1.11 / diff
pkgsrc/parallel/openmpi/patches/patch-aa deleted
pkgsrc/parallel/openmpi/patches/patch-ai deleted
pkgsrc/parallel/openmpi/patches/patch-aj deleted
pkgsrc/parallel/openmpi/patches/patch-ak@1.6 / diff
pkgsrc/parallel/openmpi/patches/patch-configure@1.3 / diff
pkgsrc/parallel/openmpi/patches/patch-ompi_mca_io_romio321_romio_configure@1.1 / diff
pkgsrc/parallel/openmpi/patches/patch-ompi_mca_sharedfp_sm_sharedfp__sm.c@1.1 / diff
pkgsrc/parallel/openmpi/patches/patch-opal_asm_asm-data.txt deleted
pkgsrc/parallel/openmpi/patches/patch-opal_tools_wrappers_opal__wrapper.c@1.1 / diff
pkgsrc/parallel/openmpi/Makefile@1.51 / diff
pkgsrc/parallel/openmpi/PLIST@1.20 / diff
pkgsrc/parallel/openmpi/buildlink3.mk@1.10 / diff
pkgsrc/parallel/openmpi/distinfo@1.23 / diff
pkgsrc/parallel/openmpi/options.mk@1.11 / diff
pkgsrc/parallel/openmpi/patches/patch-aa deleted
pkgsrc/parallel/openmpi/patches/patch-ai deleted
pkgsrc/parallel/openmpi/patches/patch-aj deleted
pkgsrc/parallel/openmpi/patches/patch-ak@1.6 / diff
pkgsrc/parallel/openmpi/patches/patch-configure@1.3 / diff
pkgsrc/parallel/openmpi/patches/patch-ompi_mca_io_romio321_romio_configure@1.1 / diff
pkgsrc/parallel/openmpi/patches/patch-ompi_mca_sharedfp_sm_sharedfp__sm.c@1.1 / diff
pkgsrc/parallel/openmpi/patches/patch-opal_asm_asm-data.txt deleted
pkgsrc/parallel/openmpi/patches/patch-opal_tools_wrappers_opal__wrapper.c@1.1 / diff
parallel/openmpi: update to 4.1.4
This is a long overdue update with some refinements, notably
default-on f90 option.
We skipped some major releases, so please excuse me not including
the whole changelog. See https://open-mpi.org for more information.
This is a long overdue update with some refinements, notably
default-on f90 option.
We skipped some major releases, so please excuse me not including
the whole changelog. See https://open-mpi.org for more information.
MAIN commitmail json YAML
doc: Updated parallel/mpi-ch to 3.4.3
MAIN commitmail json YAML
pkgsrc/parallel/mpi-ch/Makefile@1.99
/
diff
pkgsrc/parallel/mpi-ch/PLIST@1.25 / diff
pkgsrc/parallel/mpi-ch/distinfo@1.30 / diff
pkgsrc/parallel/mpi-ch/options.mk@1.6 / diff
pkgsrc/parallel/mpi-ch/patches/patch-configure@1.3 / diff
pkgsrc/parallel/mpi-ch/patches/patch-modules_libfabric_configure@1.1 / diff
pkgsrc/parallel/mpi-ch/patches/patch-modules_ucx_configure@1.1 / diff
pkgsrc/parallel/mpi-ch/patches/patch-src_mpi_romio_configure@1.2 / diff
pkgsrc/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c@1.2 / diff
pkgsrc/parallel/mpi-ch/PLIST@1.25 / diff
pkgsrc/parallel/mpi-ch/distinfo@1.30 / diff
pkgsrc/parallel/mpi-ch/options.mk@1.6 / diff
pkgsrc/parallel/mpi-ch/patches/patch-configure@1.3 / diff
pkgsrc/parallel/mpi-ch/patches/patch-modules_libfabric_configure@1.1 / diff
pkgsrc/parallel/mpi-ch/patches/patch-modules_ucx_configure@1.1 / diff
pkgsrc/parallel/mpi-ch/patches/patch-src_mpi_romio_configure@1.2 / diff
pkgsrc/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c@1.2 / diff
parallel/mpi-ch: update to 3.4.3
This also removes the MPI_PREFIX business. No parallel installation of multiple
MPIs intended right now. Also, the f90 option is default now to support upcoming
parallel-computing packages in the default setup.
===============================================================================
Changes in 3.4.3
===============================================================================
# Fix bugs in GPFS ROMIO driver
# Fix bugs in DAOS ROMIO driver
# Fix nemesis shm bug on systems with weak memory consistency
# Fix progress issue in ch4:ucx finalize
# Fix nonblocking collective issue during finalize
# Fix UBSan warnings in 32-bit builds
# Fix predefined datatype handle leaks
# Fix bug in topology-aware communicator creation
# Fix Slurm nodelist parsing
# Fix testcase for out-of-tree configuration
# Fix truncation testcase for possible disconnection error
# Hydra help message improvements
# Add support for DAOS pool and container labels
===============================================================================
Changes in 3.4.2
===============================================================================
# Update configure options to support --disable-ze and --disable-cuda
to explicitly disable GPU-awareness
# Update embedded hwloc to version 2.4.1. Fixes a build issue on
systems with OpenCL.
# Fixes for Argobots thread package support.
# Fixes for the DAOS ROMIO driver (thanks to Intel for contributing)
# Fix additional bugs in GPU-aware nonblocking op collectives
# Fix 'make check' errors with embedded MPL and json-c libraries
# Fix support for GNI provider in ch4:ofi netmod
# Fix bug in dynamic window memory registration with ch4:ofi netmod
# Fix bug in persistent pt2pt when used with MPI_PROC_NULL
# Fix bug in hydra nameserver when freeing published entries
# Fix bugs in GPFS ROMIO driver (thanks to IBM for contributing)
# Fix bug in darray type creation (thanks to IBM for contributing)
# Fix bugs in XPMEM support
# Fix bug in MPI_Comm_spawn_multiple where non-root args were not ignored
===============================================================================
Changes in 3.4.1
===============================================================================
# Fix bug in GPU memory hooks that caused failures with NCCL
# Fix bug in GPU-aware nonblocking op collectives
# Hide symbols from embedded json-c module
# Removed anonymous struct/union usage in MPL
# Disable Java support in embedded UCX module
===============================================================================
Changes in 3.4
===============================================================================
# ch4 replaces ch3 as the default device configuration. If no network
module is specified at configuration-time, MPICH will search the
user environment in order to select one to build. The user will be
prompted to choose if no preferred network library is detected.
# Add support for Yaksa datatype engine (default in ch4).
# Add support for GPU buffers (CUDA, Level Zero) in pt2pt,
collectives, and one-sided communication.
# Add support for XPMEM.
# Add support for multiple virtual communication interfaces for more
efficient MPI_THREAD_MULTIPLE (experimental).
# Add DAOS ADIO driver to ROMIO (contributed by Intel).
# Add Quobyte ADIO driver to ROMIO (contributed by Quobyte).
# Add support for Arm compiler toolchain
# Add support for NVIDIA HPC compilers
# Add support for flang/f18 Fortran compiler
# Add support for AddressSanitizer and UndefinedBehaviorSanitizer to
debug configuration
# Remove mxm, llc, and portals4 netmods from ch3.
# Remove support for logical reduction operations on floating point
types.
# Remove MPIX_Mutex interfaces.
# Further improvements to ch4 business card exchange: extra
long address support and fixes for PMIx integration.
# Un-inline non-critical ch4 code for improved build times.
# Fix several test program bugs.
# Fix several static analysis and compiler warnings.
# Change the signature of MPID_Init to include requested and provided
thread levels.
===============================================================================
Changes in 3.3.2
===============================================================================
# Add support for struct sockaddr in MPICH, Hydra, and PMI socket
code. Works with both IPv4 and IPv6 addresses.
# Fix localhost detection on FreeBSD and macOS, avoiding long delay
during startup.
# Fix thread-local storage detection.
# Fix several test program bugs.
# Fix several static analysis and compiler warnings.
===============================================================================
Changes in 3.3.1
===============================================================================
# Fix bug in MPI_Testany/MPI_Waitany that could cause deadlock
# Add missing functionality in Argobots library support
# Fix configure-time detection for thread local storage support
# Better support for reproducible builds. Thanks to Bernhard
Wiedemann for the report and fixes
# Fix support for XL compiler toolchain
# Add support for -static-intel linking option
# Fix building on systems without weak symbols
# Fix several static analysis and compiler warnings
===============================================================================
Changes in 3.3
===============================================================================
# CH4 Device: A new device layer implementation designed for low software
overheads. CH4 has experimental support for OFI and UCX network libraries,
and POSIX shared memory. Thanks to Intel, Mellanox, and RIKEN AICS for
participating in the CH4 coding effort.
# Fixed SLURM integration in Hydra for new node list format.
# Added support for PMIx (https://pmix.github.io/pmix/) client
library in CH4 netmods. Note that you must use a compatible PMIx
server in this configuration.
# Better organization of collectives in the MPI layer. The new
scheme, which de-couples implementation from selection logic,
enables easier integration of additional algorithms.
# TSP collectives framework: A C++-template style framework for
collective algorithms is added to allow single collective
implementation to move data over generic or device-specific
transport functions.
# Improvements to derived datatype testing (DTPools -
https://wiki.mpich.org/mpich/index.php/DTPools).
# Added new "non-catastrophic" error codes to expose internal
resource exhaustion.
# Added info hints to MPI_Comm_split_type to support splitting
communicators by machine topology. Both on-node (socket, core,
etc.) and off-node (switch-level) hints are defined.
# Improvements to MPI_THREAD_MULTIPLE in CH4 through new thread safety
models at the Virtual Network Interface (VNI) level. This introduces two
new models that leverage work-queues to offload operations and improve
scalability under contention.
# Message Driven Thread Activation (MDTA). An alternative locking
model is defined for MPI_THREAD_MULTIPLE in CH4.
# Added PMI usage optimizations for business card exchange in CH4
netmods.
# Improvements on MPI_Abort. MPI_Abort invoked on subcommunicators will
only abort the connected processes within that communicator.
`
# Cleanup of whitespace (ch3 excluded) using the
maint/code-cleanup.sh script. For instructions on how to update
PRs/branches based on MPICH before the cleanup, see
https://github.com/pmodels/mpich/wiki/Code-Cleanup-Procedure.
# Removed the PAMI device and poe PMI client.
# C99 compiler support is now required to build MPICH.
# Several other minor bug fixes, memory leak fixes, and code cleanup.
A full list of changes is available at the following link:
http://git.mpich.org/mpich.git/shortlog/v3.2..v3.3
A list of bugs that have been fixed is available at the following
link:
https://github.com/pmodels/mpich/milestone/25?closed=1
This also removes the MPI_PREFIX business. No parallel installation of multiple
MPIs intended right now. Also, the f90 option is default now to support upcoming
parallel-computing packages in the default setup.
===============================================================================
Changes in 3.4.3
===============================================================================
# Fix bugs in GPFS ROMIO driver
# Fix bugs in DAOS ROMIO driver
# Fix nemesis shm bug on systems with weak memory consistency
# Fix progress issue in ch4:ucx finalize
# Fix nonblocking collective issue during finalize
# Fix UBSan warnings in 32-bit builds
# Fix predefined datatype handle leaks
# Fix bug in topology-aware communicator creation
# Fix Slurm nodelist parsing
# Fix testcase for out-of-tree configuration
# Fix truncation testcase for possible disconnection error
# Hydra help message improvements
# Add support for DAOS pool and container labels
===============================================================================
Changes in 3.4.2
===============================================================================
# Update configure options to support --disable-ze and --disable-cuda
to explicitly disable GPU-awareness
# Update embedded hwloc to version 2.4.1. Fixes a build issue on
systems with OpenCL.
# Fixes for Argobots thread package support.
# Fixes for the DAOS ROMIO driver (thanks to Intel for contributing)
# Fix additional bugs in GPU-aware nonblocking op collectives
# Fix 'make check' errors with embedded MPL and json-c libraries
# Fix support for GNI provider in ch4:ofi netmod
# Fix bug in dynamic window memory registration with ch4:ofi netmod
# Fix bug in persistent pt2pt when used with MPI_PROC_NULL
# Fix bug in hydra nameserver when freeing published entries
# Fix bugs in GPFS ROMIO driver (thanks to IBM for contributing)
# Fix bug in darray type creation (thanks to IBM for contributing)
# Fix bugs in XPMEM support
# Fix bug in MPI_Comm_spawn_multiple where non-root args were not ignored
===============================================================================
Changes in 3.4.1
===============================================================================
# Fix bug in GPU memory hooks that caused failures with NCCL
# Fix bug in GPU-aware nonblocking op collectives
# Hide symbols from embedded json-c module
# Removed anonymous struct/union usage in MPL
# Disable Java support in embedded UCX module
===============================================================================
Changes in 3.4
===============================================================================
# ch4 replaces ch3 as the default device configuration. If no network
module is specified at configuration-time, MPICH will search the
user environment in order to select one to build. The user will be
prompted to choose if no preferred network library is detected.
# Add support for Yaksa datatype engine (default in ch4).
# Add support for GPU buffers (CUDA, Level Zero) in pt2pt,
collectives, and one-sided communication.
# Add support for XPMEM.
# Add support for multiple virtual communication interfaces for more
efficient MPI_THREAD_MULTIPLE (experimental).
# Add DAOS ADIO driver to ROMIO (contributed by Intel).
# Add Quobyte ADIO driver to ROMIO (contributed by Quobyte).
# Add support for Arm compiler toolchain
# Add support for NVIDIA HPC compilers
# Add support for flang/f18 Fortran compiler
# Add support for AddressSanitizer and UndefinedBehaviorSanitizer to
debug configuration
# Remove mxm, llc, and portals4 netmods from ch3.
# Remove support for logical reduction operations on floating point
types.
# Remove MPIX_Mutex interfaces.
# Further improvements to ch4 business card exchange: extra
long address support and fixes for PMIx integration.
# Un-inline non-critical ch4 code for improved build times.
# Fix several test program bugs.
# Fix several static analysis and compiler warnings.
# Change the signature of MPID_Init to include requested and provided
thread levels.
===============================================================================
Changes in 3.3.2
===============================================================================
# Add support for struct sockaddr in MPICH, Hydra, and PMI socket
code. Works with both IPv4 and IPv6 addresses.
# Fix localhost detection on FreeBSD and macOS, avoiding long delay
during startup.
# Fix thread-local storage detection.
# Fix several test program bugs.
# Fix several static analysis and compiler warnings.
===============================================================================
Changes in 3.3.1
===============================================================================
# Fix bug in MPI_Testany/MPI_Waitany that could cause deadlock
# Add missing functionality in Argobots library support
# Fix configure-time detection for thread local storage support
# Better support for reproducible builds. Thanks to Bernhard
Wiedemann for the report and fixes
# Fix support for XL compiler toolchain
# Add support for -static-intel linking option
# Fix building on systems without weak symbols
# Fix several static analysis and compiler warnings
===============================================================================
Changes in 3.3
===============================================================================
# CH4 Device: A new device layer implementation designed for low software
overheads. CH4 has experimental support for OFI and UCX network libraries,
and POSIX shared memory. Thanks to Intel, Mellanox, and RIKEN AICS for
participating in the CH4 coding effort.
# Fixed SLURM integration in Hydra for new node list format.
# Added support for PMIx (https://pmix.github.io/pmix/) client
library in CH4 netmods. Note that you must use a compatible PMIx
server in this configuration.
# Better organization of collectives in the MPI layer. The new
scheme, which de-couples implementation from selection logic,
enables easier integration of additional algorithms.
# TSP collectives framework: A C++-template style framework for
collective algorithms is added to allow single collective
implementation to move data over generic or device-specific
transport functions.
# Improvements to derived datatype testing (DTPools -
https://wiki.mpich.org/mpich/index.php/DTPools).
# Added new "non-catastrophic" error codes to expose internal
resource exhaustion.
# Added info hints to MPI_Comm_split_type to support splitting
communicators by machine topology. Both on-node (socket, core,
etc.) and off-node (switch-level) hints are defined.
# Improvements to MPI_THREAD_MULTIPLE in CH4 through new thread safety
models at the Virtual Network Interface (VNI) level. This introduces two
new models that leverage work-queues to offload operations and improve
scalability under contention.
# Message Driven Thread Activation (MDTA). An alternative locking
model is defined for MPI_THREAD_MULTIPLE in CH4.
# Added PMI usage optimizations for business card exchange in CH4
netmods.
# Improvements on MPI_Abort. MPI_Abort invoked on subcommunicators will
only abort the connected processes within that communicator.
`
# Cleanup of whitespace (ch3 excluded) using the
maint/code-cleanup.sh script. For instructions on how to update
PRs/branches based on MPICH before the cleanup, see
https://github.com/pmodels/mpich/wiki/Code-Cleanup-Procedure.
# Removed the PAMI device and poe PMI client.
# C99 compiler support is now required to build MPICH.
# Several other minor bug fixes, memory leak fixes, and code cleanup.
A full list of changes is available at the following link:
http://git.mpich.org/mpich.git/shortlog/v3.2..v3.3
A list of bugs that have been fixed is available at the following
link:
https://github.com/pmodels/mpich/milestone/25?closed=1
MAIN commitmail json YAML
add option descriptions for sge and slurm
MAIN commitmail json YAML
pkgsrc/math/plumed/PLIST@1.2
/
diff
pkgsrc/math/plumed/PLIST.Darwin@1.1 / diff
pkgsrc/math/plumed/PLIST.Linux@1.1 / diff
pkgsrc/math/plumed/PLIST.Darwin@1.1 / diff
pkgsrc/math/plumed/PLIST.Linux@1.1 / diff
math/plumed: fix PLIST, shared libs only for Linux and OSX per upstream
MAIN commitmail json YAML
doc: Updated math/plumed to 2.8.0nb1
MAIN commitmail json YAML
math/plumed: PKGREVISION incrememnt
MAIN commitmail json YAML
math/plumed: needs CBLAS (possibly picks gslcblas otherwise)
MAIN commitmail json YAML
pkgsrc/devel/hdf5-c++/Makefile@1.9
/
diff
pkgsrc/devel/hdf5/PLIST@1.30 / diff
pkgsrc/devel/hdf5/options.mk@1.10 / diff
pkgsrc/devel/hdf5/PLIST@1.30 / diff
pkgsrc/devel/hdf5/options.mk@1.10 / diff
hdf5 and hdf5-c++: fix up the threads option
Explicitly disable the hl interface of hdf5 with threads, removing
files from PLIST, and also preventing support for the C++ interface.
That is also why we won't enable threads by default anytime soon.
It is a specific option needed for some users. The jury is still out
if the threadsafe option or the C++ API has less users.
Not incrementing PKGREVISION, as build of hdf5-c++ with threads option
was broken anyway, as was PLIST of hdf5. Default builds without threads
are unaffected.
Explicitly disable the hl interface of hdf5 with threads, removing
files from PLIST, and also preventing support for the C++ interface.
That is also why we won't enable threads by default anytime soon.
It is a specific option needed for some users. The jury is still out
if the threadsafe option or the C++ API has less users.
Not incrementing PKGREVISION, as build of hdf5-c++ with threads option
was broken anyway, as was PLIST of hdf5. Default builds without threads
are unaffected.
MAIN commitmail json YAML
pkgsrc/audio/mpg123-jack/Makefile@1.4
/
diff
pkgsrc/audio/mpg123-pulse/Makefile@1.37 / diff
pkgsrc/audio/mpg123/Makefile@1.66 / diff
pkgsrc/doc/CHANGES-2022@1.3448 / diff
pkgsrc/audio/mpg123-pulse/Makefile@1.37 / diff
pkgsrc/audio/mpg123/Makefile@1.66 / diff
pkgsrc/doc/CHANGES-2022@1.3448 / diff
audio/mpg123*: reset pkgrevisions and correct CHANGES entries
The revisions were not reset on version upgrade and the committer
name was wrong in CHANGES. Please excuse the retro-fixup.
The revisions were not reset on version upgrade and the committer
name was wrong in CHANGES. Please excuse the retro-fixup.
MAIN commitmail json YAML
doc: Updated audio/mpg123-pulse to 1.30.1nb3
MAIN commitmail json YAML
doc: Updated audio/mpg123-nas to 1.30.1
MAIN commitmail json YAML
doc: Updated audio/mpg123-jack to 1.30.1nb2
MAIN commitmail json YAML
doc: Updated audio/mpg123 to 1.30.1nb1
MAIN commitmail json YAML
mpg123: update to 1.30.1
Upstream changes since last pkgsrc version:
1.30.1
------
- mpg123:
-- Show stderr of network helpers in -vvv mode.
-- Use curl --http0.9, if available, to support shoutcast v1 streams
without wget (wget not needing such switch, yet).
-- Support file:// URLs for local access as was intended with the last
release.
-- Give more helpful error message if neither wget nor curl are usable, also
allow error messages from curl to appear when not --quiet.
-- Update the man page.
1.30.0
------
- build:
-- Use dummy as default module when no other outputs are enabled. This also
fixes a non-module build with just the dummy (bug 333).
-- Use CMAKE_CURRENT_SOURCE_DIR in CMake build to help nested use (bug 335).
-- some updates for OS/2 support (fixing up stdin playing, for example)
- mpg123:
-- new network backend using external tools/libraries to also support HTTPS
-- old network backend changed to use h_addr_list[0] instead of h_addr
-- terminal control keys now case-sensitive (fixing smal/big pitch controls)
-- additional terminal control keys for simple equalizer control (A/a for bass,
J/j for mids, N/n for treble, e for reset, E for printout)
-- terminal volume control now in decibel steps and bounded to +/- 60 dB
-- terminal control now also with audio from stdin (bug 338) via
/dev/tty or ctermid()
-- terminal control also available for OS/2 and Windows platforms
-- re-print tag info on decrease of terminal width for a bit less mess
-- always print an empty line after tag info for cleaner appearance
-- print lyrics also to stderr
-- remote control API v10 with "@P 3" as additonal message on track end
-- also added PROGRESS command as opposite of SILENCE
-- fix some verbosity, tweak help for --icy-interval
-- added --auth-file
-- also obscure argument to --auth for others
-- Cygwin/MinGW: Provide _win32_utf8_wide and _win32_wide_utf8 unconditionally.
It is needed by the WASAPI plugins, the underlying conversion functions
should be present since Windows 2000. Fixes WASAPI support on Cygwin.
Also needed for new network code.
- libout123:
-- pulse: initialize more error codes to avoid bogus error messages
-- os2: considerable fixup for proper writes of full buffers avoiding
nasty effects from the ... special audio system, more cleanup still
nice-to-have, but still lacking
1.29.4
------
- libmpg123:
-- Saturate reader file position at off_t limit to satisfy
undefined behaviour checkers.
-- Avoid harmless unitialized value in ID3v1 check (filepos, later being
set before actual use).
- libout123:
-- Build fix for win32_wasapi output for predefined _WIN32_WINNT (bug 329),
thanks to Vincent Torri.
Upstream changes since last pkgsrc version:
1.30.1
------
- mpg123:
-- Show stderr of network helpers in -vvv mode.
-- Use curl --http0.9, if available, to support shoutcast v1 streams
without wget (wget not needing such switch, yet).
-- Support file:// URLs for local access as was intended with the last
release.
-- Give more helpful error message if neither wget nor curl are usable, also
allow error messages from curl to appear when not --quiet.
-- Update the man page.
1.30.0
------
- build:
-- Use dummy as default module when no other outputs are enabled. This also
fixes a non-module build with just the dummy (bug 333).
-- Use CMAKE_CURRENT_SOURCE_DIR in CMake build to help nested use (bug 335).
-- some updates for OS/2 support (fixing up stdin playing, for example)
- mpg123:
-- new network backend using external tools/libraries to also support HTTPS
-- old network backend changed to use h_addr_list[0] instead of h_addr
-- terminal control keys now case-sensitive (fixing smal/big pitch controls)
-- additional terminal control keys for simple equalizer control (A/a for bass,
J/j for mids, N/n for treble, e for reset, E for printout)
-- terminal volume control now in decibel steps and bounded to +/- 60 dB
-- terminal control now also with audio from stdin (bug 338) via
/dev/tty or ctermid()
-- terminal control also available for OS/2 and Windows platforms
-- re-print tag info on decrease of terminal width for a bit less mess
-- always print an empty line after tag info for cleaner appearance
-- print lyrics also to stderr
-- remote control API v10 with "@P 3" as additonal message on track end
-- also added PROGRESS command as opposite of SILENCE
-- fix some verbosity, tweak help for --icy-interval
-- added --auth-file
-- also obscure argument to --auth for others
-- Cygwin/MinGW: Provide _win32_utf8_wide and _win32_wide_utf8 unconditionally.
It is needed by the WASAPI plugins, the underlying conversion functions
should be present since Windows 2000. Fixes WASAPI support on Cygwin.
Also needed for new network code.
- libout123:
-- pulse: initialize more error codes to avoid bogus error messages
-- os2: considerable fixup for proper writes of full buffers avoiding
nasty effects from the ... special audio system, more cleanup still
nice-to-have, but still lacking
1.29.4
------
- libmpg123:
-- Saturate reader file position at off_t limit to satisfy
undefined behaviour checkers.
-- Avoid harmless unitialized value in ID3v1 check (filepos, later being
set before actual use).
- libout123:
-- Build fix for win32_wasapi output for predefined _WIN32_WINNT (bug 329),
thanks to Vincent Torri.
MAIN commitmail json YAML
doc: Updated math/plumed to 2.8.0
MAIN commitmail json YAML
pkgsrc/math/Makefile@1.547
/
diff
pkgsrc/math/plumed/DESCR@1.1 / diff
pkgsrc/math/plumed/Makefile@1.1 / diff
pkgsrc/math/plumed/PLIST@1.1 / diff
pkgsrc/math/plumed/distinfo@1.1 / diff
pkgsrc/math/plumed/options.mk@1.1 / diff
pkgsrc/math/plumed/patches/patch-Makefile.conf.in@1.1 / diff
pkgsrc/math/plumed/patches/patch-configure@1.1 / diff
pkgsrc/math/plumed/patches/patch-configure.ac@1.1 / diff
pkgsrc/math/plumed/DESCR@1.1 / diff
pkgsrc/math/plumed/Makefile@1.1 / diff
pkgsrc/math/plumed/PLIST@1.1 / diff
pkgsrc/math/plumed/distinfo@1.1 / diff
pkgsrc/math/plumed/options.mk@1.1 / diff
pkgsrc/math/plumed/patches/patch-Makefile.conf.in@1.1 / diff
pkgsrc/math/plumed/patches/patch-configure@1.1 / diff
pkgsrc/math/plumed/patches/patch-configure.ac@1.1 / diff
math/plumed: added package for the MD algorithm library
MAIN commitmail json YAML
math/arpack-ng: add header to make pkglint happy
MAIN commitmail json YAML
doc: Updated math/arpack-ng to 3.8.0nb2
MAIN commitmail json YAML
pkgsrc/math/arpack-ng/Makefile@1.7
/
diff
pkgsrc/math/arpack-ng/PLIST@1.3 / diff
pkgsrc/math/arpack-ng/options.mk@1.1 / diff
pkgsrc/math/arpack-ng/PLIST@1.3 / diff
pkgsrc/math/arpack-ng/options.mk@1.1 / diff
math/arpack-ng: update BLAS support for all choices and add mpi option
MAIN commitmail json YAML
doc: Updated devel/cmake to 3.23.2nb1
MAIN commitmail json YAML
pkgsrc/devel/cmake/Makefile@1.193
/
diff
pkgsrc/devel/cmake/distinfo@1.196 / diff
pkgsrc/devel/cmake/patches/patch-Modules_FindBLAS.cmake@1.1 / diff
pkgsrc/devel/cmake/patches/patch-Modules_FindLAPACK.cmake@1.1 / diff
pkgsrc/devel/cmake/distinfo@1.196 / diff
pkgsrc/devel/cmake/patches/patch-Modules_FindBLAS.cmake@1.1 / diff
pkgsrc/devel/cmake/patches/patch-Modules_FindLAPACK.cmake@1.1 / diff
devel/cmake: add support for choosing BLAS/LAPACK .pc
This adds already upstreamed patches to FindBLAS.cmake and FindLAPACK.cmake
that enables our build infrastructure to better select which BLAS package
to locate in cmake-using builds via specifying a name for pkg-config
instead of hardcoded 'blas' or 'lapack'.
Remove with cmake-3.25.
This adds already upstreamed patches to FindBLAS.cmake and FindLAPACK.cmake
that enables our build infrastructure to better select which BLAS package
to locate in cmake-using builds via specifying a name for pkg-config
instead of hardcoded 'blas' or 'lapack'.
Remove with cmake-3.25.
MAIN commitmail json YAML
graphics/vtk: fix dependent builds that would fail to find a binary in cmake
This missing binary link breaks builds where CMake insists on finding it
alongside the linked CMake files (example: graphics/pcl).
This missing binary link breaks builds where CMake insists on finding it
alongside the linked CMake files (example: graphics/pcl).
MAIN commitmail json YAML
doc: Updated lang/tcl to 8.6.12nb3
MAIN commitmail json YAML
pkgsrc/lang/tcl/Makefile@1.120
/
diff
pkgsrc/lang/tcl/PLIST@1.30 / diff
pkgsrc/lang/tcl/distinfo@1.83 / diff
pkgsrc/lang/tcl/patches/patch-unix_Makefile.in@1.19 / diff
pkgsrc/lang/tcl/PLIST@1.30 / diff
pkgsrc/lang/tcl/distinfo@1.83 / diff
pkgsrc/lang/tcl/patches/patch-unix_Makefile.in@1.19 / diff
lang/tcl: install modules like upstream wants, fixing pkg/56696
We carried a patch that changed the installation of the standard Tcl modules,
to some old style with names that apparently made PLIST generation easier.
Now, we got some more fixed version numbers that will change on updates,
but the upside is that R does not enter an endless loop anymore on installing
R-tcltk2 when DISPLAY is empty, see pkg/56696, which should be fixed now.
Take care with PLIST when updating and please don't re-introduce the bug.
A better fix might be to fix the endless loop in Tcl as called by R, but
just messing around with upstream installation is not a good starting
point.
We carried a patch that changed the installation of the standard Tcl modules,
to some old style with names that apparently made PLIST generation easier.
Now, we got some more fixed version numbers that will change on updates,
but the upside is that R does not enter an endless loop anymore on installing
R-tcltk2 when DISPLAY is empty, see pkg/56696, which should be fixed now.
Take care with PLIST when updating and please don't re-introduce the bug.
A better fix might be to fix the endless loop in Tcl as called by R, but
just messing around with upstream installation is not a good starting
point.
MAIN commitmail json YAML
databases/ldb: remove wip reference from bl3
MAIN commitmail json YAML
doc: Updated net/samba4 to 4.15.5
MAIN commitmail json YAML
net/samba4: security update to 4.15.5
This is a security release in order to address the following defects:
o CVE-2021-44141: UNIX extensions in SMB1 disclose whether the outside target
of a symlink exists.
https://www.samba.org/samba/security/CVE-2021-44141.html
o CVE-2021-44142: Out-of-Bound Read/Write on Samba vfs_fruit module.
https://www.samba.org/samba/security/CVE-2021-44142.html
o CVE-2022-0336: Re-adding an SPN skips subsequent SPN conflict checks.
https://www.samba.org/samba/security/CVE-2022-0336.html
This is a security release in order to address the following defects:
o CVE-2021-44141: UNIX extensions in SMB1 disclose whether the outside target
of a symlink exists.
https://www.samba.org/samba/security/CVE-2021-44141.html
o CVE-2021-44142: Out-of-Bound Read/Write on Samba vfs_fruit module.
https://www.samba.org/samba/security/CVE-2021-44142.html
o CVE-2022-0336: Re-adding an SPN skips subsequent SPN conflict checks.
https://www.samba.org/samba/security/CVE-2022-0336.html
MAIN commitmail json YAML
doc: Updated net/samba4 to 4.15.4
MAIN commitmail json YAML
pkgsrc/net/samba4/Makefile@1.138
/
diff
pkgsrc/net/samba4/PLIST@1.42 / diff
pkgsrc/net/samba4/distinfo@1.73 / diff
pkgsrc/net/samba4/options.mk@1.17 / diff
pkgsrc/net/samba4/patches/patch-lib_replace_wscript@1.3 / diff
pkgsrc/net/samba4/patches/patch-source3_libsmb_libsmb__stat.c deleted
pkgsrc/net/samba4/patches/patch-source3_smbd_open.c@1.1 / diff
pkgsrc/net/samba4/patches/patch-source3_utils_net__offlinejoin.c@1.1 / diff
pkgsrc/net/samba4/patches/patch-source4_heimdal__build_roken.h@1.3 / diff
pkgsrc/net/samba4/patches/patch-source4_scripting_wsript_build@1.4 / diff
pkgsrc/net/samba4/patches/patch-source4_torture_libsmbclient_libsmbclient.c deleted
pkgsrc/net/samba4/patches/patch-source4_utils_oLschema2ldif_wscript__build@1.2 / diff
pkgsrc/net/samba4/PLIST@1.42 / diff
pkgsrc/net/samba4/distinfo@1.73 / diff
pkgsrc/net/samba4/options.mk@1.17 / diff
pkgsrc/net/samba4/patches/patch-lib_replace_wscript@1.3 / diff
pkgsrc/net/samba4/patches/patch-source3_libsmb_libsmb__stat.c deleted
pkgsrc/net/samba4/patches/patch-source3_smbd_open.c@1.1 / diff
pkgsrc/net/samba4/patches/patch-source3_utils_net__offlinejoin.c@1.1 / diff
pkgsrc/net/samba4/patches/patch-source4_heimdal__build_roken.h@1.3 / diff
pkgsrc/net/samba4/patches/patch-source4_scripting_wsript_build@1.4 / diff
pkgsrc/net/samba4/patches/patch-source4_torture_libsmbclient_libsmbclient.c deleted
pkgsrc/net/samba4/patches/patch-source4_utils_oLschema2ldif_wscript__build@1.2 / diff
net/samba4: version 4.15.4
This includes a patch (already posted upstream) to fix updated Samba on
NetBSD's /proc, so the upgrade is not blocked anymore.
Release notes for 4.15:
EW FEATURES/CHANGES
====================
VFS
---
The effort to modernize Samba's VFS interface is complete and Samba 4.15.0 ships
with a modernized VFS designed for the post SMB1 world.
For details please refer to the documentation at source3/modules/The_New_VFS.txt
or visit the <https://wiki.samba.org/index.php/The_New_VFS>.
Bind DLZ: add the ability to set allow/deny lists for zone transfer clients
---------------------------------------------------------------------------
Up to now, any client could use a DNS zone transfer request to the
bind server, and get an answer from Samba. Now the default behaviour
will be to deny those request. Two new options have been added to
manage the list of authorized/denied clients for zone transfer
requests. In order to be accepted, the request must be issued by a
client that is in the allow list and NOT in the deny list.
"server multi channel support" no longer experimental
-----------------------------------------------------
This option is enabled by default starting with 4.15 (on Linux and FreeBSD).
Due to dependencies on kernel APIs of Linux or FreeBSD, it's only possible
to use this feature on Linux and FreeBSD for now.
samba-tool available without the ad-dc
--------------------------------------
The 'samba-tool' command is now available when samba is configured
"--without-ad-dc". Not all features will work, and some ad-dc specific options
have been disabled. The 'samba-tool domain' options, for example, are limited
when no ad-dc is present. Samba must still be built with ads in order to enable
'samba-tool'.
Improved command line user experience
-------------------------------------
Samba utilities did not consistently implement their command line interface. A
number of options were requiring to specify values in one tool and not in the
other, some options meant different in different tools.
These should be stories of the past now. A new command line parser has been
implemented with sanity checking. Also the command line interface has been
simplified and provides better control for encryption, signing and kerberos.
Previously many tools silently ignored unknown options. To prevent unexpected
behaviour all tools will now consistently reject unknown options.
Also several command line options have a smb.conf variable to control the
default now.
All tools are now logging to stderr by default. You can use "--debug-stdout" to
change the behavior. All servers will log to stderr at early startup until logging
is setup to go to a file by default.
### Common parser:
Options added:
--client-protection=off|sign|encrypt
Options renamed:
--kerberos -> --use-kerberos=required|desired|off
--krb5-ccache -> --use-krb5-ccache=CCACHE
--scope -> --netbios-scope=SCOPE
--use-ccache -> --use-winbind-ccache
Options removed:
-e|--encrypt
-C removed from --use-winbind-ccache
-i removed from --netbios-scope
-S|--signing
### Duplicates in command line utils
ldbadd/ldbdel/ldbedit/ldbmodify/ldbrename/ldbsearch:
-e is still available as an alias for --editor,
as it used to be.
-s is no longer reported as an alias for --configfile,
it never worked that way as it was shadowed by '-s' for '--scope'.
ndrdump:
-l is not available for --load-dso anymore
net:
-l is not available for --long anymore
sharesec:
-V is not available for --viewsddl anymore
smbcquotas:
--user -> --quota-user
nmbd:
--log-stdout -> --debug-stdout
smbd:
--log-stdout -> --debug-stdout
winbindd:
--log-stdout -> --debug-stdout
Scanning of trusted domains and enterprise principals
-----------------------------------------------------
As an artifact from the NT4 times, we still scanned the list of trusted domains
on winbindd startup. This is wrong as we never can get a full picture in Active
Directory. It is time to change the default value to "No". Also with this change
we always use enterprise principals for Kerberos so that the DC will be able
to redirect ticket requests to the right DC. This is e.g. needed for one way
trusts. The options `winbind use krb5 enterprise principals` and
`winbind scan trusted domains` will be deprecated in one of the next releases.
Support for Offline Domain Join (ODJ)
-------------------------------------
The net utility is now able to support the offline domain join feature
as known from the Windows djoin.exe command for many years. Samba's
implementation is accessible via the 'net offlinejoin' subcommand. It
can provision computers and request offline joining for both Windows
and Unix machines. It is also possible to provision computers from
Windows (using djoin.exe) and use the generated data in Samba's 'net'
utility. The existing options for the provisioning and joining steps
are documented in the net(8) manpage.
'samba-tool dns zoneoptions' for aging control
----------------------------------------------
The 'samba-tool dns zoneoptions' command can be used to turn aging on
and off, alter the refresh and no-refresh periods, and manipulate the
timestamps of existing records.
To turn aging on for a zone, you can use something like this:
samba-tool dns zoneoptions --aging=1 --refreshinterval=306600
which turns on aging and ensures no records less than five years old
are aged out and scavenged. After aging has been on for sufficient
time for records to be renewed, the command
samba-tool dns zoneoptions --refreshinterval=168
will set the refresh period to the standard seven days. Using this two
step process will help prevent the temporary loss of dynamic records
if scavenging happens before their first renewal.
Marking old records as static or dynamic with 'samba-tool'
----------------------------------------------------------
A bug in Samba versions prior to 4.9 meant records that were meant to
be static were marked as dynamic and vice versa. To fix the timestamps
in these domains, it is possible to use the following options,
preferably before turning aging on.
--mark-old-records-static
--mark-records-dynamic-regex
--mark-records-static-regex
The "--mark-old-records-static" option will make records older than the
specified date static (that is, with a zero timestamp). For example,
if you upgraded to Samba 4.9 in November 2018, you could use ensure no
old records will be mistakenly interpreted as dynamic using the
following option:
samba-tool dns zoneoptions --mark-old-records-static=2018-11-30
Then, if you know that that will have marked some records as static
that should be dynamic, and you know which those are due to your
naming scheme, you can use commands like:
samba-tool dns zoneoptions --mark-records-dynamic-regex='\w+-desktop'
where '\w+-desktop' is a perl-compatible regular expression that will
match 'bob-desktop', 'alice-desktop', and so on.
These options are deliberately long and cumbersome to type, so people
have a chance to think before they get to the end. You can make a
mess if you get it wrong.
All 'samba-tool dns zoneoptions' modes can be given a "--dry-run/-n"
argument that allows you to inspect the likely results before going
ahead.
NOTE: for aging to work, you need to have "dns zone scavenging = yes"
set in the smb.conf of at least one server.
DNS tombstones are now deleted as appropriate
---------------------------------------------
When all the records for a DNS name have been deleted, the node is put
in a tombstoned state (separate from general AD object tombstoning,
which deleted nodes also go through). These tombstones should be
cleaned up periodically. Due to a conflation of scavenging and
tombstoning, we have only been deleting tombstones when aging is
enabled.
If you have a lot of tombstoned DNS nodes (that is, DNS names for
which you have removed all the records), cleaning up these DNS
tombstones may take a noticeable time.
DNS tombstones use a consistent timestamp format
------------------------------------------------
DNS records use an hours-since-1601 timestamp format except for in the
case of tombstone records where a 100-nanosecond-intervals-since-1601
format is used (this latter format being the most common in Windows).
We had mixed that up, which might have had strange effects in zones
where aging was enabled (and hence tombstone timestamps were used).
samba-tool dns update and RPC changes
-------------------------------------
The dnsserver DCERPC pipe can be used by 'samba-tool' and Windows tools
to manipulate dns records on the remote server. A bug in Samba meant
it was not possible to update an existing DNS record to change the
TTL. The general behaviour of RPC updates is now closer to that of
Windows.
'samba-tool dns update' is now a bit more careful in rejecting and
warning you about malformed IPv4 and IPv6 addresses.
CVE-2021-3671: Crash in Heimdal KDC and updated security release policy
-----------------------------------------------------------------------
An unuthenticated user can crash the AD DC KDC by omitting the server
name in a TGS-REQ. Per Samba's updated security process a specific
security release was not made for this issue as it is a recoverable
Denial Of Service.
See https://wiki.samba.org/index.php/Samba_Security_Proces
samba-tool domain backup offline with the LMDB backend
------------------------------------------------------
samba-tool domain backup offline, when operating with the LMDB backend
now correctly takes out locks against concurrent modification of the
database during the backup. If you use this tool on a Samba AD DC
using LMDB, you should upgrade to this release for safer backups.
REMOVED FEATURES
================
Tru64 ACL support has been removed from this release. The last
supported release of Tru64 UNIX was in 2012.
NIS support has been removed from this release. This is not
available in Linux distributions anymore.
The DLZ DNS plugin is no longer built for Bind versions 9.8 and 9.9,
which have been out of support since 2018.
smb.conf changes
================
Parameter Name Description Default
-------------- ----------- -------
client use kerberos New desired
client max protocol Values Removed
client min protocol Values Removed
client protection New default
client smb3 signing algorithms New see man smb.conf
client smb3 encryption algorithms New see man smb.conf
preopen:posix-basic-regex New No
preopen:nomatch_log_level New 5
preopen:match_log_level New 5
preopen:nodigits_log_level New 1
preopen:founddigits_log_level New 3
preopen:reset_log_level New 5
preopen:push_log_level New 3
preopen:queue_log_level New 10
server max protocol Values Removed
server min protocol Values Removed
server multi channel support Changed Yes (on Linux and FreeBSD)
server smb3 signing algorithms New see man smb.conf
server smb3 encryption algorithms New see man smb.conf
winbind use krb5 enterprise principals Changed Yes
winbind scan trusted domains Changed No
Release notes for 4.14:
NEW FEATURES/CHANGES
====================
Here is a copy of a clarification note added to the Samba code
in the file: VFS-License-clarification.txt.
--------------------------------------------------------------
A clarification of our GNU GPL License enforcement boundary within the Samba
Virtual File System (VFS) layer.
Samba is licensed under the GNU GPL. All code committed to the Samba
project or that creates a "modified version" or software "based on" Samba must
be either licensed under the GNU GPL or a compatible license.
Samba has several plug-in interfaces where external code may be called
from Samba GNU GPL licensed code. The most important of these is the
Samba VFS layer.
Samba VFS modules are intimately connected by header files and API
definitions to the part of the Samba code that provides file services,
and as such, code that implements a plug-in Samba VFS module must be
licensed under the GNU GPL or a compatible license.
However, Samba VFS modules may themselves call third-party external
libraries that are not part of the Samba project and are externally
developed and maintained.
As long as these third-party external libraries do not use any of the
Samba internal structure, APIs or interface definitions created by the
Samba project (to the extent that they would be considered subject to the GNU
GPL), then the Samba Team will not consider such third-party external
libraries called from Samba VFS modules as "based on" and/or creating a
"modified version" of the Samba code for the purposes of GNU GPL.
Accordingly, we do not require such libraries be licensed under the GNU GPL
or a GNU GPL compatible license.
VFS
---
The effort to modernize Samba's VFS interface has reached a major milestone with
the next release Samba 4.14.
For details please refer to the documentation at source3/modules/The_New_VFS.txt or
visit the <https://wiki.samba.org/index.php/The_New_VFS>.
Printing
--------
Publishing printers in AD is more reliable and more printer features are
added to the published information in AD. Samba now also supports Windows
drivers for the ARM64 architecture.
Client Group Policy
-------------------
This release extends Samba to support Group Policy functionality for Winbind
clients. Active Directory Administrators can set policies that apply Sudoers
configuration, and cron jobs to run hourly, daily, weekly or monthly.
To enable the application of Group Policies on a client, set the global
smb.conf option 'apply group policies' to 'yes'. Policies are applied on an
interval of every 90 minutes, plus a random offset between 0 and 30 minutes.
Policies applied by Samba are 'non-tattooing', meaning that changes can be
reverted by executing the `samba-gpupdate --unapply` command. Policies can be
re-applied using the `samba-gpupdate --force` command.
To view what policies have been or will be applied to a system, use the
`samba-gpupdate --rsop` command.
Administration of Samba policy requires that a Samba ADMX template be uploaded
to the SYSVOL share. The samba-tool command `samba-tool gpo admxload` is
provided as a convenient method for adding this policy. Once uploaded, policies
can be modified in the Group Policy Management Editor under Computer
Configuration/Policies/Administrative Templates. Alternatively, Samba policy
may be managed using the `samba-tool gpo manage` command. This tool does not
require the admx templates to be installed.
Python 3.6 or later required
----------------------------
Samba's minimum runtime requirement for python was raised to Python
3.6 with samba 4.13. Samba 4.14 raises this minimum version to Python
3.6 also to build Samba. It is no longer possible to build Samba
(even just the file server) with Python versions 2.6 and 2.7.
As Python 2.7 has been End Of Life upstream since April 2020, Samba
is dropping ALL Python 2.x support in this release.
Miscellaneous samba-tool changes
--------------------------------
The 'samba-tool' subcommands to manage AD objects (e.g. users, computers and
groups) now consistently use the "add" command when adding a new object to
the AD. The previous deprecation warnings when using the 'add' commands
have been removed. For compatibility reasons, both the 'add' and 'create'
commands can be used now.
Users, groups and contacts can now be renamed with the respective rename
commands.
Locked users can be unlocked with the new 'samba-tool user unlock' command.
The 'samba-tool user list' and 'samba-tool group listmembers' commands
provide additional options to hide expired and disabled user accounts
(--hide-expired and --hide-disabled).
CTDB CHANGES
============
* The NAT gateway and LVS features now uses the term "leader" to refer
to the main node in a group through which traffic is routed and
"follower" for other members of a group. The command for
determining the leader has changed to "ctdb natgw leader" (from
"ctdb natgw master"). The configuration keyword for indicating that
a node can not be the leader of a group has changed to
"follower-only" (from "slave-only"). Identical changes were made
for LVS.
* Remove "ctdb isnotrecmaster" command. It isn't used by CTDB's
scripts and can be checked by users with "ctdb pnn" and "ctdb
recmaster".
smb.conf changes
================
Parameter Name Description Default
-------------- ----------- -------
smb encrypt Removed
async dns timeout New 10
client smb encrypt New default
honor change notify privilege New No
smbd force process locks New No
server smb encrypt New default
This includes a patch (already posted upstream) to fix updated Samba on
NetBSD's /proc, so the upgrade is not blocked anymore.
Release notes for 4.15:
EW FEATURES/CHANGES
====================
VFS
---
The effort to modernize Samba's VFS interface is complete and Samba 4.15.0 ships
with a modernized VFS designed for the post SMB1 world.
For details please refer to the documentation at source3/modules/The_New_VFS.txt
or visit the <https://wiki.samba.org/index.php/The_New_VFS>.
Bind DLZ: add the ability to set allow/deny lists for zone transfer clients
---------------------------------------------------------------------------
Up to now, any client could use a DNS zone transfer request to the
bind server, and get an answer from Samba. Now the default behaviour
will be to deny those request. Two new options have been added to
manage the list of authorized/denied clients for zone transfer
requests. In order to be accepted, the request must be issued by a
client that is in the allow list and NOT in the deny list.
"server multi channel support" no longer experimental
-----------------------------------------------------
This option is enabled by default starting with 4.15 (on Linux and FreeBSD).
Due to dependencies on kernel APIs of Linux or FreeBSD, it's only possible
to use this feature on Linux and FreeBSD for now.
samba-tool available without the ad-dc
--------------------------------------
The 'samba-tool' command is now available when samba is configured
"--without-ad-dc". Not all features will work, and some ad-dc specific options
have been disabled. The 'samba-tool domain' options, for example, are limited
when no ad-dc is present. Samba must still be built with ads in order to enable
'samba-tool'.
Improved command line user experience
-------------------------------------
Samba utilities did not consistently implement their command line interface. A
number of options were requiring to specify values in one tool and not in the
other, some options meant different in different tools.
These should be stories of the past now. A new command line parser has been
implemented with sanity checking. Also the command line interface has been
simplified and provides better control for encryption, signing and kerberos.
Previously many tools silently ignored unknown options. To prevent unexpected
behaviour all tools will now consistently reject unknown options.
Also several command line options have a smb.conf variable to control the
default now.
All tools are now logging to stderr by default. You can use "--debug-stdout" to
change the behavior. All servers will log to stderr at early startup until logging
is setup to go to a file by default.
### Common parser:
Options added:
--client-protection=off|sign|encrypt
Options renamed:
--kerberos -> --use-kerberos=required|desired|off
--krb5-ccache -> --use-krb5-ccache=CCACHE
--scope -> --netbios-scope=SCOPE
--use-ccache -> --use-winbind-ccache
Options removed:
-e|--encrypt
-C removed from --use-winbind-ccache
-i removed from --netbios-scope
-S|--signing
### Duplicates in command line utils
ldbadd/ldbdel/ldbedit/ldbmodify/ldbrename/ldbsearch:
-e is still available as an alias for --editor,
as it used to be.
-s is no longer reported as an alias for --configfile,
it never worked that way as it was shadowed by '-s' for '--scope'.
ndrdump:
-l is not available for --load-dso anymore
net:
-l is not available for --long anymore
sharesec:
-V is not available for --viewsddl anymore
smbcquotas:
--user -> --quota-user
nmbd:
--log-stdout -> --debug-stdout
smbd:
--log-stdout -> --debug-stdout
winbindd:
--log-stdout -> --debug-stdout
Scanning of trusted domains and enterprise principals
-----------------------------------------------------
As an artifact from the NT4 times, we still scanned the list of trusted domains
on winbindd startup. This is wrong as we never can get a full picture in Active
Directory. It is time to change the default value to "No". Also with this change
we always use enterprise principals for Kerberos so that the DC will be able
to redirect ticket requests to the right DC. This is e.g. needed for one way
trusts. The options `winbind use krb5 enterprise principals` and
`winbind scan trusted domains` will be deprecated in one of the next releases.
Support for Offline Domain Join (ODJ)
-------------------------------------
The net utility is now able to support the offline domain join feature
as known from the Windows djoin.exe command for many years. Samba's
implementation is accessible via the 'net offlinejoin' subcommand. It
can provision computers and request offline joining for both Windows
and Unix machines. It is also possible to provision computers from
Windows (using djoin.exe) and use the generated data in Samba's 'net'
utility. The existing options for the provisioning and joining steps
are documented in the net(8) manpage.
'samba-tool dns zoneoptions' for aging control
----------------------------------------------
The 'samba-tool dns zoneoptions' command can be used to turn aging on
and off, alter the refresh and no-refresh periods, and manipulate the
timestamps of existing records.
To turn aging on for a zone, you can use something like this:
samba-tool dns zoneoptions --aging=1 --refreshinterval=306600
which turns on aging and ensures no records less than five years old
are aged out and scavenged. After aging has been on for sufficient
time for records to be renewed, the command
samba-tool dns zoneoptions --refreshinterval=168
will set the refresh period to the standard seven days. Using this two
step process will help prevent the temporary loss of dynamic records
if scavenging happens before their first renewal.
Marking old records as static or dynamic with 'samba-tool'
----------------------------------------------------------
A bug in Samba versions prior to 4.9 meant records that were meant to
be static were marked as dynamic and vice versa. To fix the timestamps
in these domains, it is possible to use the following options,
preferably before turning aging on.
--mark-old-records-static
--mark-records-dynamic-regex
--mark-records-static-regex
The "--mark-old-records-static" option will make records older than the
specified date static (that is, with a zero timestamp). For example,
if you upgraded to Samba 4.9 in November 2018, you could use ensure no
old records will be mistakenly interpreted as dynamic using the
following option:
samba-tool dns zoneoptions --mark-old-records-static=2018-11-30
Then, if you know that that will have marked some records as static
that should be dynamic, and you know which those are due to your
naming scheme, you can use commands like:
samba-tool dns zoneoptions --mark-records-dynamic-regex='\w+-desktop'
where '\w+-desktop' is a perl-compatible regular expression that will
match 'bob-desktop', 'alice-desktop', and so on.
These options are deliberately long and cumbersome to type, so people
have a chance to think before they get to the end. You can make a
mess if you get it wrong.
All 'samba-tool dns zoneoptions' modes can be given a "--dry-run/-n"
argument that allows you to inspect the likely results before going
ahead.
NOTE: for aging to work, you need to have "dns zone scavenging = yes"
set in the smb.conf of at least one server.
DNS tombstones are now deleted as appropriate
---------------------------------------------
When all the records for a DNS name have been deleted, the node is put
in a tombstoned state (separate from general AD object tombstoning,
which deleted nodes also go through). These tombstones should be
cleaned up periodically. Due to a conflation of scavenging and
tombstoning, we have only been deleting tombstones when aging is
enabled.
If you have a lot of tombstoned DNS nodes (that is, DNS names for
which you have removed all the records), cleaning up these DNS
tombstones may take a noticeable time.
DNS tombstones use a consistent timestamp format
------------------------------------------------
DNS records use an hours-since-1601 timestamp format except for in the
case of tombstone records where a 100-nanosecond-intervals-since-1601
format is used (this latter format being the most common in Windows).
We had mixed that up, which might have had strange effects in zones
where aging was enabled (and hence tombstone timestamps were used).
samba-tool dns update and RPC changes
-------------------------------------
The dnsserver DCERPC pipe can be used by 'samba-tool' and Windows tools
to manipulate dns records on the remote server. A bug in Samba meant
it was not possible to update an existing DNS record to change the
TTL. The general behaviour of RPC updates is now closer to that of
Windows.
'samba-tool dns update' is now a bit more careful in rejecting and
warning you about malformed IPv4 and IPv6 addresses.
CVE-2021-3671: Crash in Heimdal KDC and updated security release policy
-----------------------------------------------------------------------
An unuthenticated user can crash the AD DC KDC by omitting the server
name in a TGS-REQ. Per Samba's updated security process a specific
security release was not made for this issue as it is a recoverable
Denial Of Service.
See https://wiki.samba.org/index.php/Samba_Security_Proces
samba-tool domain backup offline with the LMDB backend
------------------------------------------------------
samba-tool domain backup offline, when operating with the LMDB backend
now correctly takes out locks against concurrent modification of the
database during the backup. If you use this tool on a Samba AD DC
using LMDB, you should upgrade to this release for safer backups.
REMOVED FEATURES
================
Tru64 ACL support has been removed from this release. The last
supported release of Tru64 UNIX was in 2012.
NIS support has been removed from this release. This is not
available in Linux distributions anymore.
The DLZ DNS plugin is no longer built for Bind versions 9.8 and 9.9,
which have been out of support since 2018.
smb.conf changes
================
Parameter Name Description Default
-------------- ----------- -------
client use kerberos New desired
client max protocol Values Removed
client min protocol Values Removed
client protection New default
client smb3 signing algorithms New see man smb.conf
client smb3 encryption algorithms New see man smb.conf
preopen:posix-basic-regex New No
preopen:nomatch_log_level New 5
preopen:match_log_level New 5
preopen:nodigits_log_level New 1
preopen:founddigits_log_level New 3
preopen:reset_log_level New 5
preopen:push_log_level New 3
preopen:queue_log_level New 10
server max protocol Values Removed
server min protocol Values Removed
server multi channel support Changed Yes (on Linux and FreeBSD)
server smb3 signing algorithms New see man smb.conf
server smb3 encryption algorithms New see man smb.conf
winbind use krb5 enterprise principals Changed Yes
winbind scan trusted domains Changed No
Release notes for 4.14:
NEW FEATURES/CHANGES
====================
Here is a copy of a clarification note added to the Samba code
in the file: VFS-License-clarification.txt.
--------------------------------------------------------------
A clarification of our GNU GPL License enforcement boundary within the Samba
Virtual File System (VFS) layer.
Samba is licensed under the GNU GPL. All code committed to the Samba
project or that creates a "modified version" or software "based on" Samba must
be either licensed under the GNU GPL or a compatible license.
Samba has several plug-in interfaces where external code may be called
from Samba GNU GPL licensed code. The most important of these is the
Samba VFS layer.
Samba VFS modules are intimately connected by header files and API
definitions to the part of the Samba code that provides file services,
and as such, code that implements a plug-in Samba VFS module must be
licensed under the GNU GPL or a compatible license.
However, Samba VFS modules may themselves call third-party external
libraries that are not part of the Samba project and are externally
developed and maintained.
As long as these third-party external libraries do not use any of the
Samba internal structure, APIs or interface definitions created by the
Samba project (to the extent that they would be considered subject to the GNU
GPL), then the Samba Team will not consider such third-party external
libraries called from Samba VFS modules as "based on" and/or creating a
"modified version" of the Samba code for the purposes of GNU GPL.
Accordingly, we do not require such libraries be licensed under the GNU GPL
or a GNU GPL compatible license.
VFS
---
The effort to modernize Samba's VFS interface has reached a major milestone with
the next release Samba 4.14.
For details please refer to the documentation at source3/modules/The_New_VFS.txt or
visit the <https://wiki.samba.org/index.php/The_New_VFS>.
Printing
--------
Publishing printers in AD is more reliable and more printer features are
added to the published information in AD. Samba now also supports Windows
drivers for the ARM64 architecture.
Client Group Policy
-------------------
This release extends Samba to support Group Policy functionality for Winbind
clients. Active Directory Administrators can set policies that apply Sudoers
configuration, and cron jobs to run hourly, daily, weekly or monthly.
To enable the application of Group Policies on a client, set the global
smb.conf option 'apply group policies' to 'yes'. Policies are applied on an
interval of every 90 minutes, plus a random offset between 0 and 30 minutes.
Policies applied by Samba are 'non-tattooing', meaning that changes can be
reverted by executing the `samba-gpupdate --unapply` command. Policies can be
re-applied using the `samba-gpupdate --force` command.
To view what policies have been or will be applied to a system, use the
`samba-gpupdate --rsop` command.
Administration of Samba policy requires that a Samba ADMX template be uploaded
to the SYSVOL share. The samba-tool command `samba-tool gpo admxload` is
provided as a convenient method for adding this policy. Once uploaded, policies
can be modified in the Group Policy Management Editor under Computer
Configuration/Policies/Administrative Templates. Alternatively, Samba policy
may be managed using the `samba-tool gpo manage` command. This tool does not
require the admx templates to be installed.
Python 3.6 or later required
----------------------------
Samba's minimum runtime requirement for python was raised to Python
3.6 with samba 4.13. Samba 4.14 raises this minimum version to Python
3.6 also to build Samba. It is no longer possible to build Samba
(even just the file server) with Python versions 2.6 and 2.7.
As Python 2.7 has been End Of Life upstream since April 2020, Samba
is dropping ALL Python 2.x support in this release.
Miscellaneous samba-tool changes
--------------------------------
The 'samba-tool' subcommands to manage AD objects (e.g. users, computers and
groups) now consistently use the "add" command when adding a new object to
the AD. The previous deprecation warnings when using the 'add' commands
have been removed. For compatibility reasons, both the 'add' and 'create'
commands can be used now.
Users, groups and contacts can now be renamed with the respective rename
commands.
Locked users can be unlocked with the new 'samba-tool user unlock' command.
The 'samba-tool user list' and 'samba-tool group listmembers' commands
provide additional options to hide expired and disabled user accounts
(--hide-expired and --hide-disabled).
CTDB CHANGES
============
* The NAT gateway and LVS features now uses the term "leader" to refer
to the main node in a group through which traffic is routed and
"follower" for other members of a group. The command for
determining the leader has changed to "ctdb natgw leader" (from
"ctdb natgw master"). The configuration keyword for indicating that
a node can not be the leader of a group has changed to
"follower-only" (from "slave-only"). Identical changes were made
for LVS.
* Remove "ctdb isnotrecmaster" command. It isn't used by CTDB's
scripts and can be checked by users with "ctdb pnn" and "ctdb
recmaster".
smb.conf changes
================
Parameter Name Description Default
-------------- ----------- -------
smb encrypt Removed
async dns timeout New 10
client smb encrypt New default
honor change notify privilege New No
smbd force process locks New No
server smb encrypt New default
MAIN commitmail json YAML
doc: Updated databases/ldb to 2.4.2
MAIN commitmail json YAML
pkgsrc/databases/ldb/Makefile@1.25
/
diff
pkgsrc/databases/ldb/buildlink3.mk@1.4 / diff
pkgsrc/databases/ldb/distinfo@1.18 / diff
pkgsrc/databases/ldb/buildlink3.mk@1.4 / diff
pkgsrc/databases/ldb/distinfo@1.18 / diff
ldb: version 2.4.2 for incoming samba4 update
MAIN commitmail json YAML
doc: Updated devel/tevent to 0.11.0nb1
MAIN commitmail json YAML
pkgsrc/devel/tevent/Makefile@1.10
/
diff
pkgsrc/devel/tevent/buildlink3.mk@1.2 / diff
pkgsrc/devel/tevent/distinfo@1.12 / diff
pkgsrc/devel/tevent/buildlink3.mk@1.2 / diff
pkgsrc/devel/tevent/distinfo@1.12 / diff
tevent: version 0.11 in preparation for samba4 update
I tested that the current samba 4.13 still works.
I tested that the current samba 4.13 still works.
MAIN commitmail json YAML
doc: Updated audio/mpg123-pulse to 1.29.3nb1
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doc: Updated audio/mpg123-nas to 1.29.3
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doc: Updated audio/mpg123-jack to 1.29.3nb1
MAIN commitmail json YAML
doc: Updated audio/mpg123 to 1.29.3
MAIN commitmail json YAML
mpg123: update to version 1.29.3
Changes:
- libmpg123: Catch more NULL pointer arguments in LFS wrappers
(most prominently: mpg123_feedseek(), bug 328).
- mpg123:
-- Fix regression that did _not_ enable --remote-err on -s anymore.
-- Fix typos in man page (thanks to Naglis Jonaitis).
-- Drop mixed-up value limits on remote control SEQ command. It is up to you
if you want to distort your sound.
-- Add note about equalizer frequency bands to man page.
- build: add BUILD_PROGRAMS option to ports/cmake
Changes:
- libmpg123: Catch more NULL pointer arguments in LFS wrappers
(most prominently: mpg123_feedseek(), bug 328).
- mpg123:
-- Fix regression that did _not_ enable --remote-err on -s anymore.
-- Fix typos in man page (thanks to Naglis Jonaitis).
-- Drop mixed-up value limits on remote control SEQ command. It is up to you
if you want to distort your sound.
-- Add note about equalizer frequency bands to man page.
- build: add BUILD_PROGRAMS option to ports/cmake
MAIN commitmail json YAML
doc: Updated audio/mpg123-pulse to 1.29.2
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doc: Updated audio/mpg123-nas to 1.29.2
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doc: Updated audio/mpg123-jack to 1.29.2nb1
MAIN commitmail json YAML
doc: Updated audio/mpg123 to 1.29.2
MAIN commitmail json YAML
mpg123: update to 1.29.2
- libmpg123: Fix non-live-decoder safeguard for mpg123_framebyframe_decode()
(was a no-op in practice, bug 324).
- libmpg123: Fix non-live-decoder safeguard for mpg123_framebyframe_decode()
(was a no-op in practice, bug 324).
MAIN commitmail json YAML
doc: Updated audio/mpg123-pulse to 1.29.1
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doc: Updated audio/mpg123-nas to 1.29.1
MAIN commitmail json YAML
doc: Updated audio/mpg123-jack to 1.29.1nb1
MAIN commitmail json YAML
doc: Updated audio/mpg123 to 1.29.1
MAIN commitmail json YAML
mpg123: version 1.29.1
Upstream changelog:
.29.1
------
- mpg123:
-- Keep default output encoding of s16 for raw and file outputs
also with the new resampler. This reverts the unintentional change in
1.26.0 of switching to f32 for forced output rate unless the NtoM
resampler is selected. In any case, you should make sure to specify
your desired --encoding if you depend on it.
-- Catch error in indexing (mpg123_scan() return value was ignored
before, bug 322).
- mpg123-strip: Lift the resync limit, as it should be to clean up really
dirty streams.
- mpg123-id3dump: Also lift resync limit for the same reasons.
- libout123: fix reporting of device property flags for buffer
- libmpg123: more safeguarding against attempts to decode if decoder
setup failed and user ignored the returned error code (bug 322)
Upstream changelog:
.29.1
------
- mpg123:
-- Keep default output encoding of s16 for raw and file outputs
also with the new resampler. This reverts the unintentional change in
1.26.0 of switching to f32 for forced output rate unless the NtoM
resampler is selected. In any case, you should make sure to specify
your desired --encoding if you depend on it.
-- Catch error in indexing (mpg123_scan() return value was ignored
before, bug 322).
- mpg123-strip: Lift the resync limit, as it should be to clean up really
dirty streams.
- mpg123-id3dump: Also lift resync limit for the same reasons.
- libout123: fix reporting of device property flags for buffer
- libmpg123: more safeguarding against attempts to decode if decoder
setup failed and user ignored the returned error code (bug 322)
MAIN commitmail json YAML
pkgsrc/devel/boost-libs/Makefile@1.88
/
diff
pkgsrc/devel/boost-libs/PLIST@1.43 / diff
pkgsrc/devel/boost-libs/files/test-backtrace.sh deleted
pkgsrc/devel/boost-libs/PLIST@1.43 / diff
pkgsrc/devel/boost-libs/files/test-backtrace.sh deleted
devel/boost-libs: fix libbacktrace logic
This avoids calling the compiler and the barrier in the Makefile which
broke build for some folks. If libbacktrace-related files appear, they
are automatically included in PLIST. This depends on a detail of the
external toolchain (e.g. on Ubuntu) which may or may not include
libbacktrace.
This avoids calling the compiler and the barrier in the Makefile which
broke build for some folks. If libbacktrace-related files appear, they
are automatically included in PLIST. This depends on a detail of the
external toolchain (e.g. on Ubuntu) which may or may not include
libbacktrace.
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doc: Updated audio/mpg123-pulse to 1.29.0
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doc: Updated audio/mpg123-nas to 1.29.0
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doc: Updated audio/mpg123-jack to 1.29.0
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doc: Updated audio/mpg123 to 1.29.0
MAIN commitmail json YAML
mpg123: update to 1.29.0
The upstream changes:
- build: added --enable-runtime-tables
- libmpg123:
-- Float deocder runtime table computation is back as option,
based on suggestion and initial patch by Ethan Halsall for a smaller
download size of the wasm decoder built from libmpg23. This only
trims the size of the binary on disk (network), for runtime
overhead and a bit of uneasyness about concurrency during table
computation, which happens implicitly on handle initialization,
only guarded by an integer flag. This does _not_ revive
mpg123_init().
-- The ID3v2 UTF-16 BOM check is now a straight-on loop and not a
recursive function.
Only the last one is relevant for this pkg. Avoids heavy stack use
on pathological files.
The upstream changes:
- build: added --enable-runtime-tables
- libmpg123:
-- Float deocder runtime table computation is back as option,
based on suggestion and initial patch by Ethan Halsall for a smaller
download size of the wasm decoder built from libmpg23. This only
trims the size of the binary on disk (network), for runtime
overhead and a bit of uneasyness about concurrency during table
computation, which happens implicitly on handle initialization,
only guarded by an integer flag. This does _not_ revive
mpg123_init().
-- The ID3v2 UTF-16 BOM check is now a straight-on loop and not a
recursive function.
Only the last one is relevant for this pkg. Avoids heavy stack use
on pathological files.
MAIN commitmail json YAML
security/p11-kit: make gettext-lib dependency explicit
It uses gettext, libintl. Enough said.
It uses gettext, libintl. Enough said.
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lang/go14: use awk and fix a script for it
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devel/libcfg+: re-generate src/Makefile.in patch to contain more context
This fixes the patch on one of my Linux systems. I just did mkpatches
on a box where the old patch works. It adds to lines of context that
make another box happy that failed to apply the patch before.
This fixes the patch on one of my Linux systems. I just did mkpatches
on a box where the old patch works. It adds to lines of context that
make another box happy that failed to apply the patch before.
MAIN commitmail json YAML
doc: Updated math/arpack-ng to 3.8.0nb1
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math/py-numba: fix typo in PLIST.Linux (hotfix, need to settle PLIST entry)
The omppool file is both in PLIST and PLIST.Linux. One needs to go. This hotfix
just removes the typo. Do we remove PLIST.Linux and assume every platform
of interest has working OpenMP? Add Darwin dep for parallel/openmp?
The omppool file is both in PLIST and PLIST.Linux. One needs to go. This hotfix
just removes the typo. Do we remove PLIST.Linux and assume every platform
of interest has working OpenMP? Add Darwin dep for parallel/openmp?
MAIN commitmail json YAML
pkgsrc/x11/qt5-qtbase/distinfo@1.64
/
diff
pkgsrc/x11/qt5-qtbase/patches/patch-mkspecs_common_gcc-base.conf@1.1 / diff
pkgsrc/x11/qt5-qtbase/patches/patch-mkspecs_common_gcc-base.conf@1.1 / diff
x11/qt5-qtbase: build fix for older gcc -march=native
See https://bugreports.qt.io/browse/QTBUG-71564 . This replaces -march=core-avx2
with -mavx2 for the respective bits of the code, to avoid interaction
with global -march=naitive in not freshest GCC. Otherwise, the build would
fail in that setup.
See https://bugreports.qt.io/browse/QTBUG-71564 . This replaces -march=core-avx2
with -mavx2 for the respective bits of the code, to avoid interaction
with global -march=naitive in not freshest GCC. Otherwise, the build would
fail in that setup.
MAIN commitmail json YAML
math/lapack, math/openblas: more inclusive 64 bit platform check
The simple approach missed alpha.
The simple approach missed alpha.
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math/Makefile: add missing blas64
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doc: Updated math/R to 4.1.0nb1
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math/Makefile: add 64 bit index BLAS packages to section
MAIN commitmail json YAML
math/R: use our BLAS
This used to not actaully honour our BLAS choice, the usage of
BLAS_LIBS was missing.
This used to not actaully honour our BLAS choice, the usage of
BLAS_LIBS was missing.
MAIN commitmail json YAML
CHANGES, TODO: entries for BLAS changes in bulk
MAIN commitmail json YAML
pkgsrc/math/blas/Makefile@1.40
/
diff
pkgsrc/math/blas64/DESCR@1.1 / diff
pkgsrc/math/blas64/Makefile@1.1 / diff
pkgsrc/math/blas64/PLIST@1.1 / diff
pkgsrc/math/blas64/buildlink3.mk@1.1 / diff
pkgsrc/math/cblas/Makefile@1.3 / diff
pkgsrc/math/cblas/PLIST@1.3 / diff
pkgsrc/math/cblas/buildlink3.mk@1.2 / diff
pkgsrc/math/cblas64/DESCR@1.1 / diff
pkgsrc/math/cblas64/Makefile@1.1 / diff
pkgsrc/math/cblas64/PLIST@1.1 / diff
pkgsrc/math/cblas64/buildlink3.mk@1.1 / diff
pkgsrc/math/lapack/Makefile.common@1.14 / diff
pkgsrc/math/lapack64/DESCR@1.1 / diff
pkgsrc/math/lapack64/Makefile@1.1 / diff
pkgsrc/math/lapack64/PLIST@1.1 / diff
pkgsrc/math/lapack64/buildlink3.mk@1.1 / diff
pkgsrc/math/lapack64/version.mk@1.1 / diff
pkgsrc/math/lapacke/Makefile@1.3 / diff
pkgsrc/math/lapacke/PLIST@1.3 / diff
:
(more 27 files)
pkgsrc/math/blas64/DESCR@1.1 / diff
pkgsrc/math/blas64/Makefile@1.1 / diff
pkgsrc/math/blas64/PLIST@1.1 / diff
pkgsrc/math/blas64/buildlink3.mk@1.1 / diff
pkgsrc/math/cblas/Makefile@1.3 / diff
pkgsrc/math/cblas/PLIST@1.3 / diff
pkgsrc/math/cblas/buildlink3.mk@1.2 / diff
pkgsrc/math/cblas64/DESCR@1.1 / diff
pkgsrc/math/cblas64/Makefile@1.1 / diff
pkgsrc/math/cblas64/PLIST@1.1 / diff
pkgsrc/math/cblas64/buildlink3.mk@1.1 / diff
pkgsrc/math/lapack/Makefile.common@1.14 / diff
pkgsrc/math/lapack64/DESCR@1.1 / diff
pkgsrc/math/lapack64/Makefile@1.1 / diff
pkgsrc/math/lapack64/PLIST@1.1 / diff
pkgsrc/math/lapack64/buildlink3.mk@1.1 / diff
pkgsrc/math/lapack64/version.mk@1.1 / diff
pkgsrc/math/lapacke/Makefile@1.3 / diff
pkgsrc/math/lapacke/PLIST@1.3 / diff
:
(more 27 files)
mk/blas.bl3, Netlib and OpenBLAS packages, NumPy: C fixup and 64 bits
This delivers 64 bit index BLAS libraries alongside 32 bit ones. This is often
called ILP64 in the BLAS world, as opposed to LP64 where integers are 32 bit
due to the Fortran default integer type, not to be confused with the basic
system ABI used by C. For really large vectors on modern machines, you want
an 'ILP64' BLAS and layers on top of it.
In preparation of better support for vendor BLAS libraries, I had to realize
that you better use the C interfaces supplied by them, not the netlib one
strapped on. A simple reason of practicability: The vendor blas libraries,
just like openblas, like to ship all symbols in one library, so you get them
whether you want it or not. Also implementations may skip Fortran and implement
the underlying functionality directly in C anyway, so one might skip a
layer of indirection. Future will tell if other layers will follow. We still
have the framework of individual layers from Netlib to combine with certain
implementations that miss them (Accelerate framework comes to mind, which
needs further work).
The framework of netlib reference packages for the separate libraries
is instructive and helps keeping things small when you not need all of them.
The installation location of the headers is now in a subdirectory to be able
to have 32 and 64 bit variants independently. The 32 bit ones are linked to
${PREFIX}/include to keep the old picture. We could be brave and remove
those, but there is some value in a build just trying -lcblas and
inclusion of <cblas.h> to be happy.
There is one blas.buildlink3.mk that is supposed to be used only once and
so avoids a combination of conflicting libraries (as the 64 bit index symbols
have the same names as the 32 bit ones).
Basic usage for getting LAPACK+BLAS is still the same as before. You get
CBLAS and LAPACKE by setting BLAS_C_INTERFACE=yes in the package. The 64 bit
indices are selected via BLAS_INDEX64=yes.
Due to the special nature of the Accelerate framework, a package has to
explicitly indicate support for it and it will also not appear on the
list of implementations by default. The reason is that it does provide
mainly CBLAS and CLAPACK (another version of C interface to LAPACK, f2c-based)
and BLAS/LAPACK with f2c/g77 calling conventions. A default build with
gfortran would not like that
This commit also fixes up math/py-numpy and math/py-numpy16 to follow the
new scheme, as that are the only packages directly affected by the change
in CBLAS providership.
This delivers 64 bit index BLAS libraries alongside 32 bit ones. This is often
called ILP64 in the BLAS world, as opposed to LP64 where integers are 32 bit
due to the Fortran default integer type, not to be confused with the basic
system ABI used by C. For really large vectors on modern machines, you want
an 'ILP64' BLAS and layers on top of it.
In preparation of better support for vendor BLAS libraries, I had to realize
that you better use the C interfaces supplied by them, not the netlib one
strapped on. A simple reason of practicability: The vendor blas libraries,
just like openblas, like to ship all symbols in one library, so you get them
whether you want it or not. Also implementations may skip Fortran and implement
the underlying functionality directly in C anyway, so one might skip a
layer of indirection. Future will tell if other layers will follow. We still
have the framework of individual layers from Netlib to combine with certain
implementations that miss them (Accelerate framework comes to mind, which
needs further work).
The framework of netlib reference packages for the separate libraries
is instructive and helps keeping things small when you not need all of them.
The installation location of the headers is now in a subdirectory to be able
to have 32 and 64 bit variants independently. The 32 bit ones are linked to
${PREFIX}/include to keep the old picture. We could be brave and remove
those, but there is some value in a build just trying -lcblas and
inclusion of <cblas.h> to be happy.
There is one blas.buildlink3.mk that is supposed to be used only once and
so avoids a combination of conflicting libraries (as the 64 bit index symbols
have the same names as the 32 bit ones).
Basic usage for getting LAPACK+BLAS is still the same as before. You get
CBLAS and LAPACKE by setting BLAS_C_INTERFACE=yes in the package. The 64 bit
indices are selected via BLAS_INDEX64=yes.
Due to the special nature of the Accelerate framework, a package has to
explicitly indicate support for it and it will also not appear on the
list of implementations by default. The reason is that it does provide
mainly CBLAS and CLAPACK (another version of C interface to LAPACK, f2c-based)
and BLAS/LAPACK with f2c/g77 calling conventions. A default build with
gfortran would not like that
This commit also fixes up math/py-numpy and math/py-numpy16 to follow the
new scheme, as that are the only packages directly affected by the change
in CBLAS providership.
MAIN commitmail json YAML
doc: Updated math/qhull to 2020.2nb1
MAIN commitmail json YAML
pkgsrc/math/qhull/Makefile@1.9
/
diff
pkgsrc/math/qhull/PLIST@1.6 / diff
pkgsrc/math/qhull/buildlink3.mk@1.4 / diff
pkgsrc/math/qhull/PLIST@1.6 / diff
pkgsrc/math/qhull/buildlink3.mk@1.4 / diff
math/qhull: install the old non-reentrant lib for existing users
MAIN commitmail json YAML
pkgsrc/math/py-numpy16/distinfo@1.4
/
diff
pkgsrc/math/py-numpy16/patches/patch-numpy_distutils_system__info.py@1.4 / diff
pkgsrc/math/py-numpy16/patches/patch-numpy_distutils_system__info.py@1.4 / diff
math/py-numpy16: document BLAS choice patch
MAIN commitmail json YAML
pkgsrc/math/py-numpy/distinfo@1.63
/
diff
pkgsrc/math/py-numpy/patches/patch-numpy_distutils_system__info.py@1.9 / diff
pkgsrc/math/py-numpy/patches/patch-numpy_distutils_system__info.py@1.9 / diff
math/py-numpy: document BLAS distinfo patch
MAIN commitmail json YAML
doc: Updated math/cblas to 3.9.1nb1
MAIN commitmail json YAML
doc: Updated math/lapacke to 3.9.1nb1
MAIN commitmail json YAML
doc: Updated math/lapack to 3.9.1nb1
MAIN commitmail json YAML
pkgsrc/math/cblas/Makefile@1.2
/
diff
pkgsrc/math/cblas/PLIST@1.2 / diff
pkgsrc/math/lapack/Makefile@1.44 / diff
pkgsrc/math/lapack/Makefile.common@1.13 / diff
pkgsrc/math/lapack/PLIST@1.6 / diff
pkgsrc/math/lapacke/Makefile@1.2 / diff
pkgsrc/math/lapacke/PLIST@1.2 / diff
pkgsrc/math/cblas/PLIST@1.2 / diff
pkgsrc/math/lapack/Makefile@1.44 / diff
pkgsrc/math/lapack/Makefile.common@1.13 / diff
pkgsrc/math/lapack/PLIST@1.6 / diff
pkgsrc/math/lapacke/Makefile@1.2 / diff
pkgsrc/math/lapacke/PLIST@1.2 / diff
math/lapack, math/cblas, math/lapacke: Remove premature cmake files from install
Those cmake config files are not useful for us and they are incorrect
for the upcoming 64-bit-index variants. Also, we could switch back
to the Makefile build from cmake in future. Let's treat the question of
CMake as implementation detail of the packages.
The actual use is via mk/blas.bl3 in pkgsrc and pkg-config. There isn't
even added value in these files, were they to be correct. CMake builds
can use pkg-config just fine.
Those cmake config files are not useful for us and they are incorrect
for the upcoming 64-bit-index variants. Also, we could switch back
to the Makefile build from cmake in future. Let's treat the question of
CMake as implementation detail of the packages.
The actual use is via mk/blas.bl3 in pkgsrc and pkg-config. There isn't
even added value in these files, were they to be correct. CMake builds
can use pkg-config just fine.
MAIN commitmail json YAML
CHANGES for mpg123 update
MAIN commitmail json YAML
pkgsrc/audio/mpg123-pulse/Makefile@1.31
/
diff
pkgsrc/audio/mpg123/Makefile@1.64 / diff
pkgsrc/audio/mpg123/Makefile.common@1.60 / diff
pkgsrc/audio/mpg123/distinfo@1.58 / diff
pkgsrc/audio/mpg123/patches/patch-configure deleted
pkgsrc/audio/mpg123/Makefile@1.64 / diff
pkgsrc/audio/mpg123/Makefile.common@1.60 / diff
pkgsrc/audio/mpg123/distinfo@1.58 / diff
pkgsrc/audio/mpg123/patches/patch-configure deleted
mpg123: update to 1.28.0
1.28.0
------
- build:
-- Fix up the build to actually build all library objects with libtool
consistently, also ensuring no pointless static archives for output
modules.
-- Adapted things to autoconf 2.71, requiring 2.69 now (the latter tested
on Debian, with their patches).
-- Improved configure to be more useful --with-default-audio to define
the search order, fix static build for --with-audio being a list
(just choosing the first one).
-- Ensure consistent use of LINK_MPG123_DLL in headers.
- build (ports/cmake):
-- Thanks to Evgeni Poberezhnikov for working with us on that.
-- Fix up ports/cmake to really work in MSVC also for users of the lib
(tested in vcpkg, bug 310).
-- Hardcode ports/cmake CPU detection for x64 and ARM as
CMAKE_SYSTEM_PROCESSOR is useless crap (bug 298 for real).
-- Add missing io.h for _setmode() MSVC warned about (bug 311).
-- Added BUILD_NO_LARGENAME define to be used by MSVC builds. Note that
an MSVC build of libmpg123 does not support 64 bit file offsets.
That would need more morting to the explicit API. Thanks to MS for
making off_t even more messy and less useful.
-- Added JACK output, fixed handling of compat_str there and in win32_wasapi.
- libsyn123: Fix syn123_mix() to actually do intermediate conversion
when input and output encoding are the same but non-float. This makes
out123 --mix work with s16 input and output, which is not that special!
- libmpg123: Fix misguided handling of part2_3_length checks in
III_get_scale_factors_1() and III_get_scale_factors_2() which invalidated
decoding of a mono source encoded as ms+i-stereo (bug 312). This was
a regression introduced with version 1.25.7.
- libout123:
-- Print basic module loading errors only for last one in list.
This enables use of an output module search list that anticipates module
files not installed with the main package.
-- Fixes for win32_wasapi build with MSVC.
1.28.0
------
- build:
-- Fix up the build to actually build all library objects with libtool
consistently, also ensuring no pointless static archives for output
modules.
-- Adapted things to autoconf 2.71, requiring 2.69 now (the latter tested
on Debian, with their patches).
-- Improved configure to be more useful --with-default-audio to define
the search order, fix static build for --with-audio being a list
(just choosing the first one).
-- Ensure consistent use of LINK_MPG123_DLL in headers.
- build (ports/cmake):
-- Thanks to Evgeni Poberezhnikov for working with us on that.
-- Fix up ports/cmake to really work in MSVC also for users of the lib
(tested in vcpkg, bug 310).
-- Hardcode ports/cmake CPU detection for x64 and ARM as
CMAKE_SYSTEM_PROCESSOR is useless crap (bug 298 for real).
-- Add missing io.h for _setmode() MSVC warned about (bug 311).
-- Added BUILD_NO_LARGENAME define to be used by MSVC builds. Note that
an MSVC build of libmpg123 does not support 64 bit file offsets.
That would need more morting to the explicit API. Thanks to MS for
making off_t even more messy and less useful.
-- Added JACK output, fixed handling of compat_str there and in win32_wasapi.
- libsyn123: Fix syn123_mix() to actually do intermediate conversion
when input and output encoding are the same but non-float. This makes
out123 --mix work with s16 input and output, which is not that special!
- libmpg123: Fix misguided handling of part2_3_length checks in
III_get_scale_factors_1() and III_get_scale_factors_2() which invalidated
decoding of a mono source encoded as ms+i-stereo (bug 312). This was
a regression introduced with version 1.25.7.
- libout123:
-- Print basic module loading errors only for last one in list.
This enables use of an output module search list that anticipates module
files not installed with the main package.
-- Fixes for win32_wasapi build with MSVC.
MAIN commitmail json YAML
pkgsrc/audio/musepack/distinfo@1.6
/
diff
pkgsrc/audio/musepack/patches/patch-libmpcdec_CMakeLists.txt@1.2 / diff
pkgsrc/audio/musepack/patches/patch-libmpcdec_CMakeLists.txt@1.2 / diff
audio/musepack: fix build for missing libm
MAIN commitmail json YAML
math/lapacke: distinfo for the changed patch
MAIN commitmail json YAML
math/lapack: fix static library name preparing for lapack64
The upcoming lapack64 needs the library name liblapack64, the
variable for that was missing in the patch. This does not change
the build of math/lapack itself.
The upcoming lapack64 needs the library name liblapack64, the
variable for that was missing in the patch. This does not change
the build of math/lapack itself.
MAIN commitmail json YAML
doc: Updated math/openblas to 0.3.15
MAIN commitmail json YAML
doc: Updated math/octave to 6.2.0
MAIN commitmail json YAML
pkgsrc/math/octave/Makefile@1.220
/
diff
pkgsrc/math/octave/PLIST@1.35 / diff
pkgsrc/math/octave/buildlink3.mk@1.23 / diff
pkgsrc/math/octave/distinfo@1.59 / diff
pkgsrc/math/octave/options.mk@1.7 / diff
pkgsrc/math/octave/patches/patch-configure.ac@1.6 / diff
pkgsrc/math/octave/patches/patch-libgnu_stdio.in.h@1.4 / diff
pkgsrc/math/octave/patches/patch-liboctave_util_quit.cc@1.3 / diff
pkgsrc/math/octave/PLIST@1.35 / diff
pkgsrc/math/octave/buildlink3.mk@1.23 / diff
pkgsrc/math/octave/distinfo@1.59 / diff
pkgsrc/math/octave/options.mk@1.7 / diff
pkgsrc/math/octave/patches/patch-configure.ac@1.6 / diff
pkgsrc/math/octave/patches/patch-libgnu_stdio.in.h@1.4 / diff
pkgsrc/math/octave/patches/patch-liboctave_util_quit.cc@1.3 / diff
octave: udpate to 6.2.0
This updates octave and also gets some more recommened dependencies in,
namely qrupdate and Mesalib (for osmesa) and gl2ps as well as the
qscintilla editor. The glpk option is on by default again.
This version of octave comes rather close to a standard build, with
optimzied BLAS and GUI fluff. We are still missing SuiteSparse and
SUNDIALS solvers, see
https://octave.org/doc/v6.2.0/External-Packages.html
PortAudio should also be considered, and LLVM be watched if that
experimental JIT settles in.
Upstream changes since 5.x:
Summary of important user-visible changes for version 6.1.0 (2020-11-26):
------------------------------------------------------------------------
### General improvements
- The `intersect`, `setdiff`, `setxor`, `union`, and `unique` functions
accept a new sorting option `"stable"` which will return output values
in the same order as the input, rather than in ascending order.
- Complex RESTful web services can now be accessed by the `webread` and
`webwrite` functions alongside with the `weboptions` structure. One
major feature is the support for cookies to enable RESTful
communication with the web service.
Additionally, the system web browser can be opened by the `web`
function.
- The `linspace` function now produces symmetrical sequences when the
endpoints are symmetric. This is more intuitive and also compatible
with recent changes made in Matlab R2019b.
- The underlying algorithm of the `rand` function has been changed.
For single precision outputs, the algorithm has been fixed so that it
produces values strictly in the range (0, 1). Previously, it could
occasionally generate the right endpoint value of 1 (See bug #41742).
In addition, the new implementation uses a uniform interval between
floating point values in the range (0, 1) rather than targeting a
uniform density (# of random integers / length along real number
line).
- Numerical integration has been improved. The `quadv` function has
been re-written so that it can compute integrands of periodic
functions. At the same time, performance is better with ~3.5X fewer
function evaluations required. A bug in `quadgk` that caused complex
path integrals specified with `"Waypoints"` to occasionally be
calculated in the opposite direction was fixed.
- The `edit` function option `"editinplace"` now defaults to `true` and
the option `"home"` now defaults to the empty matrix `[]`. Files will
no longer be copied to the user's HOME directory for editing. The old
behavior can be restored by setting `"editinplace"` to `false` and
`"home"` to `"~/octave"`.
- The `format` command supports two new options: `uppercase` and
`lowercase` (default). With the default, print a lowercase 'e' for
the exponent character in scientific notation and lowercase 'a-f' for
the hex digits representing 10-15. With `uppercase`, print 'E' and
'A-F' instead. The previous uppercase formats, `E` and `G`, no longer
control the case of the output.
Additionally, the `format` command can be called with multiple options
for controlling the format, spacing, and case in arbitrary order.
For example:
format long e uppercase loose
Note, in the case of multiple competing format options the rightmost
one is used, and, in case of an error, the previous format remains
unchanged.
- L-value references (e.g., increment (++), decrement (--), and all
in-place assignment operators (+=, -=, *=, /=, etc.)) are no longer
allowed in anonymous functions.
- New warnings have been added about questionable uses of the colon ':'
range operator. Each has a new warning ID so that it can be disabled
if desired.
> `Octave:colon-complex-argument` : when any arg is complex
> `Octave:colon-nonscalar-argument` : when any arg is non-scalar
- The `regexp` and related functions now correctly handle and *require*
strings in UTF-8 encoding. As with any other function that requires
strings to be encoded in Octave's native encoding, you can use
`native2unicode` to convert from your preferred locale. For example,
the copyright symbol in UTF-8 is `native2unicode (169, "latin1")`.
- The startup file `octaverc` can now be located in the platform
dependent location for user local configuration files (e.g.,
${XDG_CONFIG_HOME}/octave/octaverc on Unix-like operating systems or
%APPDATA%\octave\octaverc on Windows).
- `pkg describe` now lists dependencies and inverse dependencies
(i.e., other installed packages that depend on the package in
question).
- `pkg test` now tests all functions in a package.
- When unloading a package, `pkg` now checks if any remaining loaded
packages depend on the one to be removed. If this is the case `pkg`
aborts with an explanatory error message. This behavior can be
overridden with the `-nodeps` option.
- The command
dbstop in CLASS at METHOD
now works to set breakpoints in classdef constructors and methods.
#### Graphics backend
- The use of Qt4 for graphics and the GUI is deprecated in Octave
version 6 and no further bug fixes will be made. Qt4 support will be
removed completely in Octave version 7.
- The `legend` function has been entirely rewritten. This fixes a
number of historical bugs, and also implements new properties such as
`"AutoUpdate"` and `"NumColumns"`. The gnuplot toolkit---which is no
longer actively maintained---still uses the old legend function.
- The `axis` function was updated which resolved 10 bugs affecting
axes to which `"equal"` had been applied.
- Graphic primitives now accept a color property value of `"none"`
which is useful when a particular primitive needs to be hidden
(for example, the Y-axis of an axes object with `"ycolor" = "none"`)
without hiding the entire primitive `"visibility" = "off"`.
- A new property `"FontSmoothing"` has been added to text and axes
objects that controls whether anti-aliasing is used during the
rendering of characters. The default is `"on"` which produces smooth,
more visually appealing text.
- The figure property `"windowscrollwheelfcn"`is now implemented.
This makes it possible to provide a callback function to be executed
when users manipulate the mouse wheel on a given figure.
- The figure properties `"pointer"`, `"pointershapecdata"`, and
`"pointershapehotspot"` are now implemented. This makes it possible
to change the shape of the cursor (pointer in Matlab-speak) displayed
in a plot window.
- The figure property `"paperpositionmode"` now has the default `"auto"`
rather than `"manual"`. This change is more intuitive and is
Matlab compatible.
- The appearance of patterned lines `"LineStyle" = ":"|"--"|"-."` has
been improved for small widths (`"LineWidth"` less than 1.5 pixels)
which is a common scenario.
- Printing to EPS files now uses a tight bounding box (`"-tight"`
argument to print) by default. This makes more sense for EPS
files which are normally embedded within other documents, and is
Matlab compatible. If necessary use the `"-loose"` option to
reproduce figures as they appeared in previous versions of Octave.
- The following print devices are no longer officially supported: cdr,
corel, aifm, ill, cgm, hpgl, mf and dxf. A warning will be thrown
when using those devices, and the code for supporting those formats
will eventually be removed from a future version of Octave.
- The placement of text subscripts and superscripts has been
re-engineered and now produces visually attractive results similar to
Latex.
### Matlab compatibility
- The function `unique` now returns column index vectors for the second
and third outputs. When duplicate values are present, the default
index to return is now the `"first"` occurrence. The previous Octave
behavior, or Matlab behavior from releases prior to R2012b, can be
obtained by using the `"legacy"` flag.
- The function `setdiff` with the `"rows"` argument now returns Matlab
compatible results. The previous Octave behavior, or Matlab behavior
from releases prior to R2012b, can be obtained by using the `"legacy"`
flag.
- The functions `intersect`, `setxor`, and `union` now accept a
`"legacy"` flag which changes the index values (second and third
outputs) as well as the orientation of all outputs to match Matlab
releases prior to R2012b.
- The function `streamtube` is Matlab compatible and plots tubes along
streamlines which are scaled by the vector field divergence. The
Octave-only extension `ostreamtube` can be used to visualize the flow
expansion and contraction of the vector field due to the local
crossflow divergence.
- The interpreter now supports handles to nested functions.
- The graphics properties `"LineWidth"` and `"MarkerSize"` are now
measured in points, *not* pixels. Compared to previous versions
of Octave, some lines and markers will appear 4/3 larger.
- The meta.class property "SuperClassList" has been renamed
"Superclasslist" for Matlab compatibility. The original name will
exist as an alias until Octave version 8.1.
- Inline functions created by the function `inline` are now of type
"inline" when interrogated with the `class` function. In previous
versions of Octave, the class returned was "function_handle". This
change is Matlab compatible. Inline functions are deprecated in
both Matlab and Octave and support may eventually be removed.
Anonymous functions can be used to replace all instances of inline
functions.
- The function `javaaddpath` now prepends new directories to the
existing dynamic classpath by default. To append them instead, use
the new `"-end"` argument. Multiple directories may now be specified
in a cell array of strings.
- An undocumented function `gui_mainfcn` has been added, for compatibility
with figures created with Matlab's GUIDE.
- Several validator functions of type `mustBe*` have been added. See
the list of new functions below.
### Alphabetical list of new functions added in Octave 6
* `auto_repeat_debug_command`
* `commandhistory`
* `commandwindow`
* `filebrowser`
* `is_same_file`
* `lightangle`
* `mustBeFinite`
* `mustBeGreaterThan`
* `mustBeGreaterThanOrEqual`
* `mustBeInteger`
* `mustBeLessThan`
* `mustBeLessThanOrEqual`
* `mustBeMember`
* `mustBeNegative`
* `mustBeNonempty`
* `mustBeNonNan`
* `mustBeNonnegative`
* `mustBeNonpositive`
* `mustBeNonsparse`
* `mustBeNonzero`
* `mustBeNumeric`
* `mustBeNumericOrLogical`
* `mustBePositive`
* `mustBeReal`
* `namedargs2cell`
* `newline`
* `ode23s`
* `ostreamtube`
* `rescale`
* `rotx`
* `roty`
* `rotz`
* `stream2`
* `stream3`
* `streamline`
* `streamtube`
* `uisetfont`
* `verLessThan`
* `web`
* `weboptions`
* `webread`
* `webwrite`
* `workspace`
### Deprecated functions and properties
The following functions and properties have been deprecated in Octave 6
and will be removed from Octave 8 (or whatever version is the second
major release after 6):
- Functions
Function | Replacement
-----------------------|------------------
`runtests` | `oruntests`
- Properties
Object | Property | Value
-----------------|---------------|------------
| |
- The environment variable used by `mkoctfile` for linker flags is now
`LDFLAGS` rather than `LFLAGS`. `LFLAGS` is deprecated, and a warning
is emitted if it is used, but it will continue to work.
### Removed functions and properties
The following functions and properties were deprecated in Octave 4.4
and have been removed from Octave 6.
- Functions
Function | Replacement
---------------------|------------------
`chop` | `sprintf` for visual results
`desktop` | `isguirunning`
`tmpnam` | `tempname`
`toascii` | `double`
`java2mat` | `__java2mat__`
- Properties
Object | Property | Value
---------------------|---------------------------|-----------------------
`annotation` | `edgecolor ("rectangle")` |
`axes` | `drawmode` |
`figure` | `doublebuffer` |
| `mincolormap` |
| `wvisual` |
| `wvisualmode` |
| `xdisplay` |
| `xvisual` |
| `xvisualmode` |
`line` | `interpreter` |
`patch` | `interpreter` |
`surface` | `interpreter` |
`text` | `fontweight` | `"demi"` and `"light"`
`uibuttongroup` | `fontweight` | `"demi"` and `"light"`
`uicontrol` | `fontweight` | `"demi"` and `"light"`
`uipanel` | `fontweight` | `"demi"` and `"light"`
`uitable` | `fontweight` | `"demi"` and `"light"`
This updates octave and also gets some more recommened dependencies in,
namely qrupdate and Mesalib (for osmesa) and gl2ps as well as the
qscintilla editor. The glpk option is on by default again.
This version of octave comes rather close to a standard build, with
optimzied BLAS and GUI fluff. We are still missing SuiteSparse and
SUNDIALS solvers, see
https://octave.org/doc/v6.2.0/External-Packages.html
PortAudio should also be considered, and LLVM be watched if that
experimental JIT settles in.
Upstream changes since 5.x:
Summary of important user-visible changes for version 6.1.0 (2020-11-26):
------------------------------------------------------------------------
### General improvements
- The `intersect`, `setdiff`, `setxor`, `union`, and `unique` functions
accept a new sorting option `"stable"` which will return output values
in the same order as the input, rather than in ascending order.
- Complex RESTful web services can now be accessed by the `webread` and
`webwrite` functions alongside with the `weboptions` structure. One
major feature is the support for cookies to enable RESTful
communication with the web service.
Additionally, the system web browser can be opened by the `web`
function.
- The `linspace` function now produces symmetrical sequences when the
endpoints are symmetric. This is more intuitive and also compatible
with recent changes made in Matlab R2019b.
- The underlying algorithm of the `rand` function has been changed.
For single precision outputs, the algorithm has been fixed so that it
produces values strictly in the range (0, 1). Previously, it could
occasionally generate the right endpoint value of 1 (See bug #41742).
In addition, the new implementation uses a uniform interval between
floating point values in the range (0, 1) rather than targeting a
uniform density (# of random integers / length along real number
line).
- Numerical integration has been improved. The `quadv` function has
been re-written so that it can compute integrands of periodic
functions. At the same time, performance is better with ~3.5X fewer
function evaluations required. A bug in `quadgk` that caused complex
path integrals specified with `"Waypoints"` to occasionally be
calculated in the opposite direction was fixed.
- The `edit` function option `"editinplace"` now defaults to `true` and
the option `"home"` now defaults to the empty matrix `[]`. Files will
no longer be copied to the user's HOME directory for editing. The old
behavior can be restored by setting `"editinplace"` to `false` and
`"home"` to `"~/octave"`.
- The `format` command supports two new options: `uppercase` and
`lowercase` (default). With the default, print a lowercase 'e' for
the exponent character in scientific notation and lowercase 'a-f' for
the hex digits representing 10-15. With `uppercase`, print 'E' and
'A-F' instead. The previous uppercase formats, `E` and `G`, no longer
control the case of the output.
Additionally, the `format` command can be called with multiple options
for controlling the format, spacing, and case in arbitrary order.
For example:
format long e uppercase loose
Note, in the case of multiple competing format options the rightmost
one is used, and, in case of an error, the previous format remains
unchanged.
- L-value references (e.g., increment (++), decrement (--), and all
in-place assignment operators (+=, -=, *=, /=, etc.)) are no longer
allowed in anonymous functions.
- New warnings have been added about questionable uses of the colon ':'
range operator. Each has a new warning ID so that it can be disabled
if desired.
> `Octave:colon-complex-argument` : when any arg is complex
> `Octave:colon-nonscalar-argument` : when any arg is non-scalar
- The `regexp` and related functions now correctly handle and *require*
strings in UTF-8 encoding. As with any other function that requires
strings to be encoded in Octave's native encoding, you can use
`native2unicode` to convert from your preferred locale. For example,
the copyright symbol in UTF-8 is `native2unicode (169, "latin1")`.
- The startup file `octaverc` can now be located in the platform
dependent location for user local configuration files (e.g.,
${XDG_CONFIG_HOME}/octave/octaverc on Unix-like operating systems or
%APPDATA%\octave\octaverc on Windows).
- `pkg describe` now lists dependencies and inverse dependencies
(i.e., other installed packages that depend on the package in
question).
- `pkg test` now tests all functions in a package.
- When unloading a package, `pkg` now checks if any remaining loaded
packages depend on the one to be removed. If this is the case `pkg`
aborts with an explanatory error message. This behavior can be
overridden with the `-nodeps` option.
- The command
dbstop in CLASS at METHOD
now works to set breakpoints in classdef constructors and methods.
#### Graphics backend
- The use of Qt4 for graphics and the GUI is deprecated in Octave
version 6 and no further bug fixes will be made. Qt4 support will be
removed completely in Octave version 7.
- The `legend` function has been entirely rewritten. This fixes a
number of historical bugs, and also implements new properties such as
`"AutoUpdate"` and `"NumColumns"`. The gnuplot toolkit---which is no
longer actively maintained---still uses the old legend function.
- The `axis` function was updated which resolved 10 bugs affecting
axes to which `"equal"` had been applied.
- Graphic primitives now accept a color property value of `"none"`
which is useful when a particular primitive needs to be hidden
(for example, the Y-axis of an axes object with `"ycolor" = "none"`)
without hiding the entire primitive `"visibility" = "off"`.
- A new property `"FontSmoothing"` has been added to text and axes
objects that controls whether anti-aliasing is used during the
rendering of characters. The default is `"on"` which produces smooth,
more visually appealing text.
- The figure property `"windowscrollwheelfcn"`is now implemented.
This makes it possible to provide a callback function to be executed
when users manipulate the mouse wheel on a given figure.
- The figure properties `"pointer"`, `"pointershapecdata"`, and
`"pointershapehotspot"` are now implemented. This makes it possible
to change the shape of the cursor (pointer in Matlab-speak) displayed
in a plot window.
- The figure property `"paperpositionmode"` now has the default `"auto"`
rather than `"manual"`. This change is more intuitive and is
Matlab compatible.
- The appearance of patterned lines `"LineStyle" = ":"|"--"|"-."` has
been improved for small widths (`"LineWidth"` less than 1.5 pixels)
which is a common scenario.
- Printing to EPS files now uses a tight bounding box (`"-tight"`
argument to print) by default. This makes more sense for EPS
files which are normally embedded within other documents, and is
Matlab compatible. If necessary use the `"-loose"` option to
reproduce figures as they appeared in previous versions of Octave.
- The following print devices are no longer officially supported: cdr,
corel, aifm, ill, cgm, hpgl, mf and dxf. A warning will be thrown
when using those devices, and the code for supporting those formats
will eventually be removed from a future version of Octave.
- The placement of text subscripts and superscripts has been
re-engineered and now produces visually attractive results similar to
Latex.
### Matlab compatibility
- The function `unique` now returns column index vectors for the second
and third outputs. When duplicate values are present, the default
index to return is now the `"first"` occurrence. The previous Octave
behavior, or Matlab behavior from releases prior to R2012b, can be
obtained by using the `"legacy"` flag.
- The function `setdiff` with the `"rows"` argument now returns Matlab
compatible results. The previous Octave behavior, or Matlab behavior
from releases prior to R2012b, can be obtained by using the `"legacy"`
flag.
- The functions `intersect`, `setxor`, and `union` now accept a
`"legacy"` flag which changes the index values (second and third
outputs) as well as the orientation of all outputs to match Matlab
releases prior to R2012b.
- The function `streamtube` is Matlab compatible and plots tubes along
streamlines which are scaled by the vector field divergence. The
Octave-only extension `ostreamtube` can be used to visualize the flow
expansion and contraction of the vector field due to the local
crossflow divergence.
- The interpreter now supports handles to nested functions.
- The graphics properties `"LineWidth"` and `"MarkerSize"` are now
measured in points, *not* pixels. Compared to previous versions
of Octave, some lines and markers will appear 4/3 larger.
- The meta.class property "SuperClassList" has been renamed
"Superclasslist" for Matlab compatibility. The original name will
exist as an alias until Octave version 8.1.
- Inline functions created by the function `inline` are now of type
"inline" when interrogated with the `class` function. In previous
versions of Octave, the class returned was "function_handle". This
change is Matlab compatible. Inline functions are deprecated in
both Matlab and Octave and support may eventually be removed.
Anonymous functions can be used to replace all instances of inline
functions.
- The function `javaaddpath` now prepends new directories to the
existing dynamic classpath by default. To append them instead, use
the new `"-end"` argument. Multiple directories may now be specified
in a cell array of strings.
- An undocumented function `gui_mainfcn` has been added, for compatibility
with figures created with Matlab's GUIDE.
- Several validator functions of type `mustBe*` have been added. See
the list of new functions below.
### Alphabetical list of new functions added in Octave 6
* `auto_repeat_debug_command`
* `commandhistory`
* `commandwindow`
* `filebrowser`
* `is_same_file`
* `lightangle`
* `mustBeFinite`
* `mustBeGreaterThan`
* `mustBeGreaterThanOrEqual`
* `mustBeInteger`
* `mustBeLessThan`
* `mustBeLessThanOrEqual`
* `mustBeMember`
* `mustBeNegative`
* `mustBeNonempty`
* `mustBeNonNan`
* `mustBeNonnegative`
* `mustBeNonpositive`
* `mustBeNonsparse`
* `mustBeNonzero`
* `mustBeNumeric`
* `mustBeNumericOrLogical`
* `mustBePositive`
* `mustBeReal`
* `namedargs2cell`
* `newline`
* `ode23s`
* `ostreamtube`
* `rescale`
* `rotx`
* `roty`
* `rotz`
* `stream2`
* `stream3`
* `streamline`
* `streamtube`
* `uisetfont`
* `verLessThan`
* `web`
* `weboptions`
* `webread`
* `webwrite`
* `workspace`
### Deprecated functions and properties
The following functions and properties have been deprecated in Octave 6
and will be removed from Octave 8 (or whatever version is the second
major release after 6):
- Functions
Function | Replacement
-----------------------|------------------
`runtests` | `oruntests`
- Properties
Object | Property | Value
-----------------|---------------|------------
| |
- The environment variable used by `mkoctfile` for linker flags is now
`LDFLAGS` rather than `LFLAGS`. `LFLAGS` is deprecated, and a warning
is emitted if it is used, but it will continue to work.
### Removed functions and properties
The following functions and properties were deprecated in Octave 4.4
and have been removed from Octave 6.
- Functions
Function | Replacement
---------------------|------------------
`chop` | `sprintf` for visual results
`desktop` | `isguirunning`
`tmpnam` | `tempname`
`toascii` | `double`
`java2mat` | `__java2mat__`
- Properties
Object | Property | Value
---------------------|---------------------------|-----------------------
`annotation` | `edgecolor ("rectangle")` |
`axes` | `drawmode` |
`figure` | `doublebuffer` |
| `mincolormap` |
| `wvisual` |
| `wvisualmode` |
| `xdisplay` |
| `xvisual` |
| `xvisualmode` |
`line` | `interpreter` |
`patch` | `interpreter` |
`surface` | `interpreter` |
`text` | `fontweight` | `"demi"` and `"light"`
`uibuttongroup` | `fontweight` | `"demi"` and `"light"`
`uicontrol` | `fontweight` | `"demi"` and `"light"`
`uipanel` | `fontweight` | `"demi"` and `"light"`
`uitable` | `fontweight` | `"demi"` and `"light"`
MAIN commitmail json YAML
math/py-scikit-learn: drop ineffective SKLEARN_NO_OPENMP
It is wrong to disable OpenMP and this setting does nothing anyway.
Maybe it did in the past. Now, the build tries to use OpenMP if
possible and this is the right thing to do.
Repeat: This change doesn't affect the build at all since that variable
is not checked (since some time?).
It is wrong to disable OpenMP and this setting does nothing anyway.
Maybe it did in the past. Now, the build tries to use OpenMP if
possible and this is the right thing to do.
Repeat: This change doesn't affect the build at all since that variable
is not checked (since some time?).
MAIN commitmail json YAML
pkgsrc/net/samba4/Makefile@1.124
/
diff
pkgsrc/net/samba4/PLIST@1.37 / diff
pkgsrc/net/samba4/PLIST.Linux@1.5 / diff
pkgsrc/net/samba4/options.mk@1.13 / diff
pkgsrc/net/samba4/PLIST@1.37 / diff
pkgsrc/net/samba4/PLIST.Linux@1.5 / diff
pkgsrc/net/samba4/options.mk@1.13 / diff
net/samba4: handle dbus dependency explicitly on Linux
This manifests as the snapper vfs files appearing depending on dbus
being present or not on Linux, causing PLIST mismatch. This option
actually disables this if desired. The default is still on, as
dbus is to be expected on modern Linux installs anyway.
This manifests as the snapper vfs files appearing depending on dbus
being present or not on Linux, causing PLIST mismatch. This option
actually disables this if desired. The default is still on, as
dbus is to be expected on modern Linux installs anyway.
MAIN commitmail json YAML
sysutils/mc: add explicit handling of samba and sftp vfs as options
MAIN commitmail json YAML
pkgsrc/math/openblas/Makefile@1.3
/
diff
pkgsrc/math/openblas/Makefile.common@1.3 / diff
pkgsrc/math/openblas/distinfo@1.3 / diff
pkgsrc/math/openblas/patches/patch-Makefile@1.3 / diff
pkgsrc/math/openblas/patches/patch-Makefile.install@1.3 / diff
pkgsrc/math/openblas/patches/patch-Makefile.rule@1.1 / diff
pkgsrc/math/openblas/patches/patch-Makefile.system@1.3 / diff
pkgsrc/math/openblas/patches/patch-c_check deleted
pkgsrc/math/openblas/patches/patch-cpuid__arm64.c deleted
pkgsrc/math/openblas/patches/patch-exports+Makefile deleted
pkgsrc/math/openblas/patches/patch-f_check@1.2 / diff
pkgsrc/math/openblas/version.mk@1.3 / diff
pkgsrc/math/openblas/Makefile.common@1.3 / diff
pkgsrc/math/openblas/distinfo@1.3 / diff
pkgsrc/math/openblas/patches/patch-Makefile@1.3 / diff
pkgsrc/math/openblas/patches/patch-Makefile.install@1.3 / diff
pkgsrc/math/openblas/patches/patch-Makefile.rule@1.1 / diff
pkgsrc/math/openblas/patches/patch-Makefile.system@1.3 / diff
pkgsrc/math/openblas/patches/patch-c_check deleted
pkgsrc/math/openblas/patches/patch-cpuid__arm64.c deleted
pkgsrc/math/openblas/patches/patch-exports+Makefile deleted
pkgsrc/math/openblas/patches/patch-f_check@1.2 / diff
pkgsrc/math/openblas/version.mk@1.3 / diff
math/openblas: update to version 0.3.15
This includes a rework of our patchery with the hope of upstreaming a good deal
of it.
These are the upstream changes since 0.3.10:
Version 0.3.15
2-May-2021
common:
- imported improvements and bugfixes from Reference-LAPACK 3.9.1
- imported LAPACKE interface fixes from Reference-LAPACK PRs 534 + 537
- fixed a problem in the cpu detection of 0.3.14 that prevented cross-compilation
- fixed a sequence problem in the generation of softlinks to the library in GMAKE
RISC V:
- fixed compilation on RISCV (missing entry in getarch)
- fixed a potential division by zero in CROTG and ZROTG
POWER:
- fixed LAPACK testsuite failures seen with the NVIDIA HPC compiler
- improved CGEMM, DGEMM and ZGEMM performance on POWER10
- added an optimized ZGEMV kernel for POWER10
- fixed a potential division by zero in CROTG and ZROTG
x86_64:
- added support for Intel Control-flow Enforcement Technology (CET)
- reverted the DOMATCOPY_RT code to the generic C version
- fixed a bug in the AVX512 SGEMM kernel introduced in 0.3.14
- fixed misapplication of -msse flag to non-SSE cpus in DYNAMIC_ARCH
- added support for compilation of the benchmarks on older OSX versions
- fix propagation of the NO_AVX512 option in CMAKE builds
- fix compilation of the AVX512 SGEMM kernel with clang-cl on Windows
- fixed compilation of the CTESTs with INTERFACE64=1 (random faults on OSX)
- corrected the Haswell DROT kernel to require AVX2/FMA3 rather than AVX512
ARM:
- fixed a potential division by zero in CROTG and ZROTG
- fixed a potential overflow in IMATCOPY/ZIMATCOPY and the CTESTs
ARM64:
- fixed spurious reads outside the array in the SGEMM tcopy macro
- fixed a potential division by zero in CROTG and ZROTG
- fixed a segmentation fault in DYNAMIC_ARCH builds (reappeared in 0.3.14)
MIPS
- fixed a potential division by zero in CROTG and ZROTG
- fixed a potential overflow in IMATCOPY/ZIMATCOPY and the CTESTs
MIPS64:
- fixed a potential division by zero in CROTG and ZROTG
SPARC:
- fixed a potential division by zero in CROTG and ZROTG
====================================================================
Version 0.3.14
17-Mar-2021
common:
* Fixed a race condition on thread shutdown in non-OpenMP builds
* Fixed custom BUFFERSIZE option getting ignored in gmake builds
* Fixed CMAKE compilation of the TRMM kernels for GENERIC platforms
* Added CBLAS interfaces for CROTG, ZROTG, CSROT and ZDROT
* Improved performance of OMATCOPY_RT across all platforms
* Changed perl scripts to use env instead of a hardcoded /usr/bin/perl
* Fixed potential misreading of the GCC compiler version in the build scripts
* Fixed convergence problems in LAPACK complex GGEV/GGES (Reference-LAPACK #477)
* Reduced the stacksize requirements for running the LAPACK testsuite (Reference-LAPACK #335)
RISCV:
* Fixed compilation on RISCV (missing entry in getarch)
POWER:
* Fixed compilation for DYNAMIC_ARCH with clang and with old gcc versions
* Added support for compilation on FreeBSD/ppc64le
* Added optimized POWER10 kernels for SSCAL, DSCAL, CSCAL, ZSCAL
* Added optimized POWER10 kernels for SROT, DROT, CDOT, SASUM, DASUM
* Improved SSWAP, DSWAP, CSWAP, ZSWAP performance on POWER10
* Improved SCOPY and CCOPY performance on POWER10
* Improved SGEMM and DGEMM performance on POWER10
* Added support for compilation with the NVIDIA HPC compiler
x86_64:
* Added an optimized bfloat16 GEMM kernel for Cooperlake
* Added CPUID autodetection for Intel Rocket Lake and Tiger Lake cpus
* Improved the performance of SASUM,DASUM,SROT,DROT on AMD Ryzen cpus
* Added support for compilation with the NAG Fortran compiler
* Fixed recognition of the AMD AOCC compiler
* Fixed compilation for DYNAMIC_ARCH with clang on Windows
* Added support for running the BLAS/CBLAS tests on Windows
* Fixed signatures of the tls callback functions for Windows x64
* Fixed various issues with fma intrinsics support handling
ARM:
* Added support for embedded Cortex M targets via a new option EMBEDDED
ARMV8:
* Fixed the THUNDERX2T99 and NEOVERSEN1 DNRM2/ZNRM2 kernels for inputs with Inf
* Added support for the DYNAMIC_LIST option
* Added support for compilation with the NVIDIA HPC compiler
* Added support for compiling with the NAG Fortran compiler
====================================================================
Version 0.3.13
12-Dec-2020
common:
* Added a generic bfloat16 SBGEMV kernel
* Fixed a potentially severe memory leak after fork in OpenMP builds
that was introduced in 0.3.12
* Added detection of the Fujitsu Fortran compiler
* Added detection of the (e)gfortran compiler on OpenBSD
* Added support for overriding the default name of the library independently
from symbol suffixing in the gmake builds (already supported in cmake)
RISCV:
* Added a RISC V port optimized for C910V
POWER:
* Added optimized POWER10 kernels for SAXPY, CAXPY, SDOT, DDOT and DGEMV_N
* Improved DGEMM performance on POWER10
* Improved STRSM and DTRSM performance on POWER9 and POWER10
* Fixed segmemtation faults in DYNAMIC_ARCH builds
* Fixed compilation with the PGI compiler
x86:
* Fixed compilation of kernels that require SSE2 intrinsics since 0.3.12
x86_64:
* Added an optimized bfloat16 SBGEMV kernel for SkylakeX and Cooperlake
* Improved the performance of SASUM and DASUM kernels through parallelization
* Improved the performance of SROT and DROT kernels
* Improved the performance of multithreaded xSYRK
* Fixed OpenMP builds that use the LLVM Clang compiler together with GNU gfortran
(where linking of both the LLVM libomp and GNU libgomp could lead to lockups or
wrong results)
* Fixed miscompilations by old gcc 4.6
* Fixed misdetection of AVX2 capability in some Sandybridge cpus
* Fixed lockups in builds combining DYNAMIC_ARCH with TARGET=GENERIC on OpenBSD
ARM64:
* Fixed segmemtation faults in DYNAMIC_ARCH builds
MIPS:
* Improved kernels for Loongson 3R3 ("3A") and 3R4 ("3B") models, including MSA
* Fixed bugs in the MSA kernels for CGEMM, CTRMM, CGEMV and ZGEMV
* Added handling of zero increments in the MSA kernels for SSWAP and DSWAP
* Added DYNAMIC_ARCH support for MIPS64 (currently Loongson3R3/3R4 only)
SPARC:
* Fixed building 32 and 64 bit SPARC kernels with the SolarisStudio compilers
====================================================================
Version 0.3.12
24-Oct-2020
common:
* Fixed missing BLAS/LAPACK functions (inadvertently dropped during
the build system restructuring)
* Fixed argument conversion macro in LAPACKE_zgesvdq (LAPACK #458)
POWER:
* Added optimized SCOPY/CCOPY kernels for POWER10
* Increased and unified the default size of the GEMM BUFFER
* Fixed building for POWER10 in DYNAMIC_ARCH mode
* POWER10 compatibility test now checks binutils version as well
* Cleaned up compiler warnings
x86_64:
* corrected compiler version checks for AVX2 compatibility
* added compiler option -mavx2 for building with flang
* fixed direct SGEMM pathway for small matrix sizes (broken by
the code refactoring in 0.3.11)
* fixed unhandled partial register clobbers in several kernels
for AXPY,DOT,GEMV_N and GEMV_T flagged by gcc10 tree-vectorizer
ARMV8:
* improved Apple Vortex support to include cross-compiling
====================================================================
Version 0.3.11
17-Oct-2020
common:
* API change:
the newly added BFLOAT16 functions were renamed to use the
letter "B" instead of "H" to avoid potential confusion with
the IEEE "half precision float" type, i.e. the 0.3.10
SHGEMM is now SBGEMM and the corresponding build option
was changed from "BUILD_HALF" to "BUILD_BFLOAT16".
* Reduced the default BLAS3_MEM_ALLOC_THRESHOLD (used as an upper
limit for placing temporary arrays on the stack) to be compatible
with a stack size of 1mb (as imposed by the JAVA runtime library)
* Added mixed-precision dot function SBDOT and utility functions
shstobf16, shdtobf16, sbf16tos and dbf16tod to convert between
single or double precision float arrays and bfloat16 arrays
* Fixed prototypes of LAPACK_?ggsvp and LAPACK_?ggsvd functions
in lapack.h
* Fixed underflow and rounding errors in LAPACK SLANV2 and DLANV2
(causing miscalculations in e.g. SHSEQR/DHSEQR, LAPACK issue #263)
* Fixed workspace calculation in LAPACK ?GELQ (LAPACK issue #415)
* Fixed several bugs in the LAPACK testsuite
* Improved performance of TRMM and TRSM for certain problem sizes
* Fixed infinite recursions and workspace miscalculations in ReLAPACK
* CMAKE builds no longer require pkg-config for creating the .pc file
* Makefile builds no longer misread NO_CBLAS=0 or NO_LAPACK=0 as
enabling these options
* Fixed detection of gfortran when invoked through an mpi wrapper
* Improve thread reinitialization performance with OpenMP after a fork
* Added support for building only the subset of the library required
for a particular precision by specifying BUILD_SINGLE, BUILD_DOUBLE
* Optional function name prefixes and suffixes are now correctly
reflected in the generated cblas.h
* Added CMAKE build support for the LAPACK and multithreading tests
POWER:
* Added optimized support for POWER10
* Added support for compiling for POWER8 in 32bit mode
* Added support for compilation with LLVM/clang
* Added support for compilation with NVIDIA/PGI compilers
* Fixed building on big-endian POWER8
* Fixed miscompilation of ZDOTC by gcc10
* Fixed alignment errors in the POWER8 SAXPY kernel
* Improved CPU detection on AIX
* Supported building with older compilers on POWER9
x86_64:
* Added support for Intel Cooperlake
* Added autodetection of AMD Renoir/Matisse/Zen3 cpus
* Added autodetection of Intel Comet Lake cpus
* Reimplemented ?sum, ?dot and daxpy using universal intrinsics
* Reset the fpu state before using the fpu on Windows as a workaround
for a problem introduced in Windows 10 build 19041 (a.k.a. SDK 2004)
* Fixed potentially undefined behaviour in the dot and gemv_t kernels
* Fixed a potential segmentation fault in DYNAMIC_ARCH builds
* Fixed building for ZEN with PGI/NVIDIA and AMD AOCC compilers
ARMV7:
* Fixed cpu detection on BSD-like systems
ARMV8:
* Added preliminary support for Apple Vortex cpus
* Added support for the Cavium ThunderX3T110 cpu
* Fixed cpu detection on BSD-like systems
* Fixed compilation in -std=C18 mode
IBM Z:
* Added support for compiling with the clang compiler
* Improved GEMM performance on Z14
This includes a rework of our patchery with the hope of upstreaming a good deal
of it.
These are the upstream changes since 0.3.10:
Version 0.3.15
2-May-2021
common:
- imported improvements and bugfixes from Reference-LAPACK 3.9.1
- imported LAPACKE interface fixes from Reference-LAPACK PRs 534 + 537
- fixed a problem in the cpu detection of 0.3.14 that prevented cross-compilation
- fixed a sequence problem in the generation of softlinks to the library in GMAKE
RISC V:
- fixed compilation on RISCV (missing entry in getarch)
- fixed a potential division by zero in CROTG and ZROTG
POWER:
- fixed LAPACK testsuite failures seen with the NVIDIA HPC compiler
- improved CGEMM, DGEMM and ZGEMM performance on POWER10
- added an optimized ZGEMV kernel for POWER10
- fixed a potential division by zero in CROTG and ZROTG
x86_64:
- added support for Intel Control-flow Enforcement Technology (CET)
- reverted the DOMATCOPY_RT code to the generic C version
- fixed a bug in the AVX512 SGEMM kernel introduced in 0.3.14
- fixed misapplication of -msse flag to non-SSE cpus in DYNAMIC_ARCH
- added support for compilation of the benchmarks on older OSX versions
- fix propagation of the NO_AVX512 option in CMAKE builds
- fix compilation of the AVX512 SGEMM kernel with clang-cl on Windows
- fixed compilation of the CTESTs with INTERFACE64=1 (random faults on OSX)
- corrected the Haswell DROT kernel to require AVX2/FMA3 rather than AVX512
ARM:
- fixed a potential division by zero in CROTG and ZROTG
- fixed a potential overflow in IMATCOPY/ZIMATCOPY and the CTESTs
ARM64:
- fixed spurious reads outside the array in the SGEMM tcopy macro
- fixed a potential division by zero in CROTG and ZROTG
- fixed a segmentation fault in DYNAMIC_ARCH builds (reappeared in 0.3.14)
MIPS
- fixed a potential division by zero in CROTG and ZROTG
- fixed a potential overflow in IMATCOPY/ZIMATCOPY and the CTESTs
MIPS64:
- fixed a potential division by zero in CROTG and ZROTG
SPARC:
- fixed a potential division by zero in CROTG and ZROTG
====================================================================
Version 0.3.14
17-Mar-2021
common:
* Fixed a race condition on thread shutdown in non-OpenMP builds
* Fixed custom BUFFERSIZE option getting ignored in gmake builds
* Fixed CMAKE compilation of the TRMM kernels for GENERIC platforms
* Added CBLAS interfaces for CROTG, ZROTG, CSROT and ZDROT
* Improved performance of OMATCOPY_RT across all platforms
* Changed perl scripts to use env instead of a hardcoded /usr/bin/perl
* Fixed potential misreading of the GCC compiler version in the build scripts
* Fixed convergence problems in LAPACK complex GGEV/GGES (Reference-LAPACK #477)
* Reduced the stacksize requirements for running the LAPACK testsuite (Reference-LAPACK #335)
RISCV:
* Fixed compilation on RISCV (missing entry in getarch)
POWER:
* Fixed compilation for DYNAMIC_ARCH with clang and with old gcc versions
* Added support for compilation on FreeBSD/ppc64le
* Added optimized POWER10 kernels for SSCAL, DSCAL, CSCAL, ZSCAL
* Added optimized POWER10 kernels for SROT, DROT, CDOT, SASUM, DASUM
* Improved SSWAP, DSWAP, CSWAP, ZSWAP performance on POWER10
* Improved SCOPY and CCOPY performance on POWER10
* Improved SGEMM and DGEMM performance on POWER10
* Added support for compilation with the NVIDIA HPC compiler
x86_64:
* Added an optimized bfloat16 GEMM kernel for Cooperlake
* Added CPUID autodetection for Intel Rocket Lake and Tiger Lake cpus
* Improved the performance of SASUM,DASUM,SROT,DROT on AMD Ryzen cpus
* Added support for compilation with the NAG Fortran compiler
* Fixed recognition of the AMD AOCC compiler
* Fixed compilation for DYNAMIC_ARCH with clang on Windows
* Added support for running the BLAS/CBLAS tests on Windows
* Fixed signatures of the tls callback functions for Windows x64
* Fixed various issues with fma intrinsics support handling
ARM:
* Added support for embedded Cortex M targets via a new option EMBEDDED
ARMV8:
* Fixed the THUNDERX2T99 and NEOVERSEN1 DNRM2/ZNRM2 kernels for inputs with Inf
* Added support for the DYNAMIC_LIST option
* Added support for compilation with the NVIDIA HPC compiler
* Added support for compiling with the NAG Fortran compiler
====================================================================
Version 0.3.13
12-Dec-2020
common:
* Added a generic bfloat16 SBGEMV kernel
* Fixed a potentially severe memory leak after fork in OpenMP builds
that was introduced in 0.3.12
* Added detection of the Fujitsu Fortran compiler
* Added detection of the (e)gfortran compiler on OpenBSD
* Added support for overriding the default name of the library independently
from symbol suffixing in the gmake builds (already supported in cmake)
RISCV:
* Added a RISC V port optimized for C910V
POWER:
* Added optimized POWER10 kernels for SAXPY, CAXPY, SDOT, DDOT and DGEMV_N
* Improved DGEMM performance on POWER10
* Improved STRSM and DTRSM performance on POWER9 and POWER10
* Fixed segmemtation faults in DYNAMIC_ARCH builds
* Fixed compilation with the PGI compiler
x86:
* Fixed compilation of kernels that require SSE2 intrinsics since 0.3.12
x86_64:
* Added an optimized bfloat16 SBGEMV kernel for SkylakeX and Cooperlake
* Improved the performance of SASUM and DASUM kernels through parallelization
* Improved the performance of SROT and DROT kernels
* Improved the performance of multithreaded xSYRK
* Fixed OpenMP builds that use the LLVM Clang compiler together with GNU gfortran
(where linking of both the LLVM libomp and GNU libgomp could lead to lockups or
wrong results)
* Fixed miscompilations by old gcc 4.6
* Fixed misdetection of AVX2 capability in some Sandybridge cpus
* Fixed lockups in builds combining DYNAMIC_ARCH with TARGET=GENERIC on OpenBSD
ARM64:
* Fixed segmemtation faults in DYNAMIC_ARCH builds
MIPS:
* Improved kernels for Loongson 3R3 ("3A") and 3R4 ("3B") models, including MSA
* Fixed bugs in the MSA kernels for CGEMM, CTRMM, CGEMV and ZGEMV
* Added handling of zero increments in the MSA kernels for SSWAP and DSWAP
* Added DYNAMIC_ARCH support for MIPS64 (currently Loongson3R3/3R4 only)
SPARC:
* Fixed building 32 and 64 bit SPARC kernels with the SolarisStudio compilers
====================================================================
Version 0.3.12
24-Oct-2020
common:
* Fixed missing BLAS/LAPACK functions (inadvertently dropped during
the build system restructuring)
* Fixed argument conversion macro in LAPACKE_zgesvdq (LAPACK #458)
POWER:
* Added optimized SCOPY/CCOPY kernels for POWER10
* Increased and unified the default size of the GEMM BUFFER
* Fixed building for POWER10 in DYNAMIC_ARCH mode
* POWER10 compatibility test now checks binutils version as well
* Cleaned up compiler warnings
x86_64:
* corrected compiler version checks for AVX2 compatibility
* added compiler option -mavx2 for building with flang
* fixed direct SGEMM pathway for small matrix sizes (broken by
the code refactoring in 0.3.11)
* fixed unhandled partial register clobbers in several kernels
for AXPY,DOT,GEMV_N and GEMV_T flagged by gcc10 tree-vectorizer
ARMV8:
* improved Apple Vortex support to include cross-compiling
====================================================================
Version 0.3.11
17-Oct-2020
common:
* API change:
the newly added BFLOAT16 functions were renamed to use the
letter "B" instead of "H" to avoid potential confusion with
the IEEE "half precision float" type, i.e. the 0.3.10
SHGEMM is now SBGEMM and the corresponding build option
was changed from "BUILD_HALF" to "BUILD_BFLOAT16".
* Reduced the default BLAS3_MEM_ALLOC_THRESHOLD (used as an upper
limit for placing temporary arrays on the stack) to be compatible
with a stack size of 1mb (as imposed by the JAVA runtime library)
* Added mixed-precision dot function SBDOT and utility functions
shstobf16, shdtobf16, sbf16tos and dbf16tod to convert between
single or double precision float arrays and bfloat16 arrays
* Fixed prototypes of LAPACK_?ggsvp and LAPACK_?ggsvd functions
in lapack.h
* Fixed underflow and rounding errors in LAPACK SLANV2 and DLANV2
(causing miscalculations in e.g. SHSEQR/DHSEQR, LAPACK issue #263)
* Fixed workspace calculation in LAPACK ?GELQ (LAPACK issue #415)
* Fixed several bugs in the LAPACK testsuite
* Improved performance of TRMM and TRSM for certain problem sizes
* Fixed infinite recursions and workspace miscalculations in ReLAPACK
* CMAKE builds no longer require pkg-config for creating the .pc file
* Makefile builds no longer misread NO_CBLAS=0 or NO_LAPACK=0 as
enabling these options
* Fixed detection of gfortran when invoked through an mpi wrapper
* Improve thread reinitialization performance with OpenMP after a fork
* Added support for building only the subset of the library required
for a particular precision by specifying BUILD_SINGLE, BUILD_DOUBLE
* Optional function name prefixes and suffixes are now correctly
reflected in the generated cblas.h
* Added CMAKE build support for the LAPACK and multithreading tests
POWER:
* Added optimized support for POWER10
* Added support for compiling for POWER8 in 32bit mode
* Added support for compilation with LLVM/clang
* Added support for compilation with NVIDIA/PGI compilers
* Fixed building on big-endian POWER8
* Fixed miscompilation of ZDOTC by gcc10
* Fixed alignment errors in the POWER8 SAXPY kernel
* Improved CPU detection on AIX
* Supported building with older compilers on POWER9
x86_64:
* Added support for Intel Cooperlake
* Added autodetection of AMD Renoir/Matisse/Zen3 cpus
* Added autodetection of Intel Comet Lake cpus
* Reimplemented ?sum, ?dot and daxpy using universal intrinsics
* Reset the fpu state before using the fpu on Windows as a workaround
for a problem introduced in Windows 10 build 19041 (a.k.a. SDK 2004)
* Fixed potentially undefined behaviour in the dot and gemv_t kernels
* Fixed a potential segmentation fault in DYNAMIC_ARCH builds
* Fixed building for ZEN with PGI/NVIDIA and AMD AOCC compilers
ARMV7:
* Fixed cpu detection on BSD-like systems
ARMV8:
* Added preliminary support for Apple Vortex cpus
* Added support for the Cavium ThunderX3T110 cpu
* Fixed cpu detection on BSD-like systems
* Fixed compilation in -std=C18 mode
IBM Z:
* Added support for compiling with the clang compiler
* Improved GEMM performance on Z14
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math/qrupdate: mark phony targets phony (want to upstream patches)
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doc: Added math/qrupdate version 1.1.2
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pkgsrc/math/Makefile@1.501
/
diff
pkgsrc/math/qrupdate/DESCR@1.1 / diff
pkgsrc/math/qrupdate/Makefile@1.1 / diff
pkgsrc/math/qrupdate/PLIST@1.1 / diff
pkgsrc/math/qrupdate/buildlink3.mk@1.1 / diff
pkgsrc/math/qrupdate/distinfo@1.1 / diff
pkgsrc/math/qrupdate/patches/patch-src_Makefile@1.1 / diff
pkgsrc/math/qrupdate/patches/patch-test_Makefile@1.1 / diff
pkgsrc/math/qrupdate/patches/patch-test_report__results@1.1 / diff
pkgsrc/math/qrupdate/patches/patch-test_utils.f@1.1 / diff
pkgsrc/math/qrupdate/DESCR@1.1 / diff
pkgsrc/math/qrupdate/Makefile@1.1 / diff
pkgsrc/math/qrupdate/PLIST@1.1 / diff
pkgsrc/math/qrupdate/buildlink3.mk@1.1 / diff
pkgsrc/math/qrupdate/distinfo@1.1 / diff
pkgsrc/math/qrupdate/patches/patch-src_Makefile@1.1 / diff
pkgsrc/math/qrupdate/patches/patch-test_Makefile@1.1 / diff
pkgsrc/math/qrupdate/patches/patch-test_report__results@1.1 / diff
pkgsrc/math/qrupdate/patches/patch-test_utils.f@1.1 / diff
math/qrupdate: add package for QR and Cholesky matrix decomposition
This is scheduled to be a dependency for math/octave to support the
named operations.
Qrupdate is a linear algebra library for fast updating of QR and Cholesky
decompositions.
Supported operations:
- QR rank-1 update (qr1up)
- QR column insert (qrinc)
- QR column delete (qrdec)
- QR column shift (qrshc)
- QR row insert (qrinr)
- QR row delete (qrder)
- Cholesky rank-1 update (ch1up)
- Cholesky rank-1 downdate (ch1dn)
- Cholesky symmetric insert (chinx)
- Cholesky symmetric insert (chdex)
- Cholesky symmetric shift (chshx)
- LU rank-1 update (lu1up)
- LU pivoted rank-1 update (lup1up)
This is scheduled to be a dependency for math/octave to support the
named operations.
Qrupdate is a linear algebra library for fast updating of QR and Cholesky
decompositions.
Supported operations:
- QR rank-1 update (qr1up)
- QR column insert (qrinc)
- QR column delete (qrdec)
- QR column shift (qrshc)
- QR row insert (qrinr)
- QR row delete (qrder)
- Cholesky rank-1 update (ch1up)
- Cholesky rank-1 downdate (ch1dn)
- Cholesky symmetric insert (chinx)
- Cholesky symmetric insert (chdex)
- Cholesky symmetric shift (chshx)
- LU rank-1 update (lu1up)
- LU pivoted rank-1 update (lup1up)
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fltk13: add missing X11 deps, pkg-config usage
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x11/fltk13: remove superfluous libxcb and libXcursor dependencies
This reverts the recent changes again. I did not see that libXcursor
has been added in the meantime by someone else.
I also verfied that libxcb ends up in the work/.buildink as indirect dependency.
So both added entries in Makefile are gone again.
This reverts the recent changes again. I did not see that libXcursor
has been added in the meantime by someone else.
I also verfied that libxcb ends up in the work/.buildink as indirect dependency.
So both added entries in Makefile are gone again.
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audio/mpg123: fix sed expression for non-GNU
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audio/mpg123: really fix PLIST.oss check
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audio/mpg123: fix check for PLIST.oss
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doc: Updated audio/mpg123-jack to 1.27.2